Variant report

Variant	rs6465901
Chromosome Location	chr7:102775018-102775019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102773371..102777248-chr7:102787778..102791965,5	K562	blood:
2	chr7:102774358..102779744-chr7:102786583..102790988,10	MCF-7	breast:
3	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:
4	chr7:102770229..102775157-chr7:102775428..102783246,10	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction
ENSG00000224415	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10260344	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10264869	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10268849	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11765948	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11772979	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13247932	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1477162	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1974715	0.80[AFR][1000 genomes]
rs2015289	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2411082	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2898640	0.86[AFR][1000 genomes]
rs4530973	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4727561	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4729884	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs6465899	1.00[AFR][1000 genomes]
rs6465904	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6955436	0.86[AFR][1000 genomes]
rs6964717	0.98[AFR][1000 genomes]
rs6964822	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6973787	0.83[AFR][1000 genomes]
rs6977206	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7801969	0.80[AMR][1000 genomes]
rs952521	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9691829	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:102760600-102782200	Weak transcription	HSMM	muscle
7	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
10	chr7:102768800-102775200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr7:102768800-102775600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:102768800-102775800	Weak transcription	Gastric	stomach
13	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea
16	chr7:102768800-102786000	Weak transcription	Brain Germinal Matrix	brain
17	chr7:102768800-102786200	Weak transcription	Fetal Heart	heart
18	chr7:102768800-102786600	Weak transcription	Lung	lung
19	chr7:102768800-102788600	Weak transcription	Right Ventricle	heart
20	chr7:102769000-102775200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:102769000-102775200	Weak transcription	NHDF-Ad	bronchial
22	chr7:102769000-102775400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:102769000-102775400	Weak transcription	Fetal Brain Female	brain
24	chr7:102769000-102775800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:102769000-102775800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr7:102769000-102781400	Weak transcription	Dnd41	blood
27	chr7:102769000-102782000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:102769000-102786000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:102769000-102786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:102769000-102786000	Weak transcription	Fetal Brain Male	brain
31	chr7:102769000-102786600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:102769000-102786800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:102769000-102787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:102769200-102775200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:102769200-102775200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:102769200-102775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr7:102769200-102775400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr7:102769200-102775600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:102769200-102775800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:102769200-102781200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr7:102769200-102781800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:102769200-102781800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr7:102769200-102781800	Weak transcription	Fetal Thymus	thymus
44	chr7:102769200-102786000	Weak transcription	Duodenum Mucosa	Duodenum
45	chr7:102769200-102786600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr7:102769200-102786800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:102769200-102787000	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr7:102769200-102787000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr7:102769200-102787000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr7:102769200-102787200	Weak transcription	Adipose Nuclei	Adipose

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