Variant report

Variant	rs59179196
Chromosome Location	chr7:102990819-102990820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102989850..102992872-chr7:102995534..102998774,5	K562	blood:
2	chr7:102983716..102986860-chr7:102990679..102992959,4	K562	blood:
3	chr20:47350163..47352126-chr7:102990689..102992821,2	MCF-7	breast:
4	chr7:102941619..102943706-chr7:102990642..102992263,2	K562	blood:
5	chr7:102990213..102992153-chr7:103000680..103003475,2	MCF-7	breast:
6	chr7:102986930..102989568-chr7:102989846..102992795,3	K562	blood:

Variant related genes	Relation type
ENSG00000235354	Chromatin interaction
ENSG00000105821	Chromatin interaction
ENSG00000161057	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10229137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230157	1.00[EUR][1000 genomes]
rs10240086	1.00[EUR][1000 genomes]
rs10245834	1.00[EUR][1000 genomes]
rs10248886	1.00[EUR][1000 genomes]
rs10251993	1.00[EUR][1000 genomes]
rs10252434	1.00[EUR][1000 genomes]
rs10260344	1.00[EUR][1000 genomes]
rs10264869	1.00[EUR][1000 genomes]
rs10268112	1.00[EUR][1000 genomes]
rs10268849	1.00[EUR][1000 genomes]
rs10273883	1.00[EUR][1000 genomes]
rs10480646	1.00[EUR][1000 genomes]
rs11760826	1.00[EUR][1000 genomes]
rs11765948	1.00[EUR][1000 genomes]
rs11772979	1.00[EUR][1000 genomes]
rs11773883	1.00[EUR][1000 genomes]
rs12155099	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12539639	1.00[EUR][1000 genomes]
rs13225565	1.00[EUR][1000 genomes]
rs13247932	1.00[EUR][1000 genomes]
rs1477159	1.00[EUR][1000 genomes]
rs1477161	1.00[EUR][1000 genomes]
rs1477162	1.00[EUR][1000 genomes]
rs1558853	1.00[EUR][1000 genomes]
rs1861725	1.00[EUR][1000 genomes]
rs1861726	1.00[EUR][1000 genomes]
rs1861732	1.00[EUR][1000 genomes]
rs1968202	1.00[EUR][1000 genomes]
rs1974715	1.00[EUR][1000 genomes]
rs2015289	1.00[EUR][1000 genomes]
rs2111381	1.00[EUR][1000 genomes]
rs2411081	1.00[EUR][1000 genomes]
rs2411082	1.00[EUR][1000 genomes]
rs28446682	1.00[EUR][1000 genomes]
rs28532043	1.00[EUR][1000 genomes]
rs2898640	1.00[EUR][1000 genomes]
rs2965097	1.00[EUR][1000 genomes]
rs3987889	1.00[AMR][1000 genomes]
rs4530973	1.00[EUR][1000 genomes]
rs4727561	1.00[EUR][1000 genomes]
rs4729883	1.00[EUR][1000 genomes]
rs4729884	1.00[EUR][1000 genomes]
rs4729892	1.00[EUR][1000 genomes]
rs59182081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59586827	1.00[EUR][1000 genomes]
rs59773217	1.00[EUR][1000 genomes]
rs60006777	1.00[EUR][1000 genomes]
rs61613960	1.00[EUR][1000 genomes]
rs62622397	1.00[EUR][1000 genomes]
rs6465898	1.00[EUR][1000 genomes]
rs6465902	1.00[EUR][1000 genomes]
rs6465905	1.00[EUR][1000 genomes]
rs6465907	1.00[EUR][1000 genomes]
rs6465911	1.00[EUR][1000 genomes]
rs6465927	1.00[EUR][1000 genomes]
rs6944809	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945578	1.00[EUR][1000 genomes]
rs6946968	1.00[EUR][1000 genomes]
rs6947777	1.00[EUR][1000 genomes]
rs6955436	1.00[EUR][1000 genomes]
rs6964822	1.00[EUR][1000 genomes]
rs6966961	1.00[EUR][1000 genomes]
rs6973702	1.00[EUR][1000 genomes]
rs6973787	1.00[EUR][1000 genomes]
rs6976290	1.00[EUR][1000 genomes]
rs6977206	1.00[EUR][1000 genomes]
rs732768	1.00[EUR][1000 genomes]
rs73412168	1.00[EUR][1000 genomes]
rs73412171	1.00[EUR][1000 genomes]
rs73412175	1.00[EUR][1000 genomes]
rs73414107	1.00[EUR][1000 genomes]
rs73418516	1.00[EUR][1000 genomes]
rs73712383	1.00[EUR][1000 genomes]
rs73712388	1.00[EUR][1000 genomes]
rs73712399	1.00[EUR][1000 genomes]
rs73714429	1.00[EUR][1000 genomes]
rs7782147	1.00[EUR][1000 genomes]
rs7792779	1.00[EUR][1000 genomes]
rs7811224	1.00[EUR][1000 genomes]
rs7811571	1.00[EUR][1000 genomes]
rs9640672	1.00[EUR][1000 genomes]
rs9641307	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9641308	1.00[EUR][1000 genomes]
rs9691829	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102988600-103002400	Weak transcription	Spleen	Spleen
2	chr7:102989000-103006200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:102989200-102991000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:102989200-102991000	Weak transcription	Gastric	stomach
5	chr7:102989200-102991000	Weak transcription	Right Ventricle	heart
6	chr7:102989200-102991200	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:102989200-102991400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:102989200-102992200	Enhancers	Colon Smooth Muscle	Colon
9	chr7:102989200-102992400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:102989200-102993200	Weak transcription	Aorta	Aorta
11	chr7:102989200-102994800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:102989200-102995800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:102989200-103002400	Weak transcription	Esophagus	oesophagus
14	chr7:102989200-103006200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:102989200-103007800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:102989200-103010600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:102989200-103011400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr7:102989200-103013200	Weak transcription	Stomach Mucosa	stomach
19	chr7:102989400-102991000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:102989400-102991200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr7:102989400-102991600	Weak transcription	Placenta	Placenta
22	chr7:102989400-102992400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr7:102989400-102993000	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:102989600-102991000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:102989600-102991200	Enhancers	Primary B cells from cord blood	blood
26	chr7:102989600-102991200	Enhancers	Adipose Nuclei	Adipose
27	chr7:102989600-102991400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:102989600-102991400	Weak transcription	Fetal Thymus	thymus
29	chr7:102989600-102991400	Enhancers	Rectal Smooth Muscle	rectum
30	chr7:102989600-102991800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr7:102989600-102992800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr7:102989600-102992800	Weak transcription	Fetal Intestine Small	intestine
33	chr7:102989600-102994800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr7:102989600-103000800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:102989600-103002400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:102989600-103002600	Weak transcription	Ovary	ovary
37	chr7:102989600-103007000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr7:102989800-102991000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:102989800-102991000	Weak transcription	Thymus	Thymus
40	chr7:102989800-102991400	Weak transcription	Right Atrium	heart
41	chr7:102989800-102991400	Weak transcription	A549	lung
42	chr7:102989800-102991600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:102989800-102991600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:102989800-102991600	Weak transcription	NH-A	brain
45	chr7:102989800-102991800	Enhancers	Primary T helper cells fromperipheralblood	blood
46	chr7:102989800-102992000	Enhancers	Brain Angular Gyrus	brain
47	chr7:102989800-102992400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr7:102989800-102992800	Weak transcription	Fetal Stomach	stomach
49	chr7:102989800-102993000	Weak transcription	Fetal Intestine Large	intestine
50	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart

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