Variant report
| Variant | rs73712388 |
|---|---|
| Chromosome Location | chr7:103112001-103112002 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103111727..103114201-chr7:103114561..103117547,2 | K562 | blood: | |
| 2 | chr7:103110722..103112367-chr7:103112649..103114305,2 | K562 | blood: | |
| 3 | chr7:103111982..103114637-chr7:103116557..103118162,2 | MCF-7 | breast: | |
| 4 | chr7:103084473..103086712-chr7:103110212..103112835,2 | K562 | blood: | |
| 5 | chr7:103106731..103109453-chr7:103110183..103113152,2 | MCF-7 | breast: | |
| 6 | chr7:103084396..103086712-chr7:103110212..103112835,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170615 | Chromatin interaction |
| ENSG00000234715 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10230157 | 1.00[EUR][1000 genomes] |
| rs10245834 | 1.00[EUR][1000 genomes] |
| rs10248886 | 1.00[EUR][1000 genomes] |
| rs10251993 | 1.00[EUR][1000 genomes] |
| rs10252434 | 1.00[EUR][1000 genomes] |
| rs10273883 | 1.00[EUR][1000 genomes] |
| rs10480646 | 1.00[EUR][1000 genomes] |
| rs28446682 | 1.00[EUR][1000 genomes] |
| rs28532043 | 1.00[EUR][1000 genomes] |
| rs2965097 | 1.00[EUR][1000 genomes] |
| rs59179196 | 1.00[EUR][1000 genomes] |
| rs59182081 | 1.00[EUR][1000 genomes] |
| rs59586827 | 1.00[EUR][1000 genomes] |
| rs59773217 | 1.00[EUR][1000 genomes] |
| rs60006777 | 1.00[EUR][1000 genomes] |
| rs61613960 | 1.00[EUR][1000 genomes] |
| rs62622397 | 1.00[EUR][1000 genomes] |
| rs6465911 | 1.00[EUR][1000 genomes] |
| rs6465927 | 1.00[EUR][1000 genomes] |
| rs732768 | 1.00[EUR][1000 genomes] |
| rs73412168 | 1.00[EUR][1000 genomes] |
| rs73412171 | 1.00[EUR][1000 genomes] |
| rs73412175 | 1.00[EUR][1000 genomes] |
| rs73414107 | 1.00[EUR][1000 genomes] |
| rs73418516 | 1.00[EUR][1000 genomes] |
| rs73712383 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73712399 | 1.00[EUR][1000 genomes] |
| rs73714429 | 1.00[EUR][1000 genomes] |
| rs7792779 | 1.00[EUR][1000 genomes] |
| rs7811224 | 1.00[EUR][1000 genomes] |
| rs7811571 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103103600-103121400 | Weak transcription | HepG2 | liver |
