Variant report
| Variant | rs28446682 |
|---|---|
| Chromosome Location | chr7:103048723-103048724 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:102723533..102726429-chr7:103048128..103049854,2 | K562 | blood: | |
| 2 | chr7:102936192..102939574-chr7:103045971..103049188,7 | MCF-7 | breast: | |
| 3 | chr7:102936159..102939121-chr7:103047482..103049245,2 | MCF-7 | breast: | |
| 4 | chr7:102987552..102990290-chr7:103045935..103048754,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000161057 | Chromatin interaction |
| ENSG00000105819 | Chromatin interaction |
| ENSG00000235354 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10230157 | 1.00[EUR][1000 genomes] |
| rs10240086 | 1.00[EUR][1000 genomes] |
| rs10245834 | 1.00[EUR][1000 genomes] |
| rs10248886 | 1.00[EUR][1000 genomes] |
| rs10251993 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10252434 | 1.00[EUR][1000 genomes] |
| rs10268112 | 1.00[EUR][1000 genomes] |
| rs10273883 | 1.00[EUR][1000 genomes] |
| rs10480646 | 1.00[EUR][1000 genomes] |
| rs28532043 | 1.00[EUR][1000 genomes] |
| rs2965097 | 1.00[EUR][1000 genomes] |
| rs4729892 | 1.00[EUR][1000 genomes] |
| rs59179196 | 1.00[EUR][1000 genomes] |
| rs59182081 | 1.00[EUR][1000 genomes] |
| rs59586827 | 1.00[EUR][1000 genomes] |
| rs59773217 | 1.00[EUR][1000 genomes] |
| rs60006777 | 1.00[EUR][1000 genomes] |
| rs61613960 | 1.00[EUR][1000 genomes] |
| rs62622397 | 1.00[EUR][1000 genomes] |
| rs6465911 | 1.00[EUR][1000 genomes] |
| rs6465927 | 1.00[EUR][1000 genomes] |
| rs732768 | 1.00[EUR][1000 genomes] |
| rs73412168 | 1.00[EUR][1000 genomes] |
| rs73412171 | 1.00[EUR][1000 genomes] |
| rs73412175 | 1.00[EUR][1000 genomes] |
| rs73414107 | 1.00[EUR][1000 genomes] |
| rs73418516 | 1.00[EUR][1000 genomes] |
| rs73712383 | 1.00[EUR][1000 genomes] |
| rs73712388 | 1.00[EUR][1000 genomes] |
| rs73712399 | 1.00[EUR][1000 genomes] |
| rs73714429 | 1.00[EUR][1000 genomes] |
| rs7792779 | 1.00[EUR][1000 genomes] |
| rs7811224 | 1.00[EUR][1000 genomes] |
| rs7811571 | 1.00[EUR][1000 genomes] |
| rs9640672 | 1.00[EUR][1000 genomes] |
| rs9641307 | 1.00[EUR][1000 genomes] |
| rs9641308 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030446 | chr7:102932689-103221638 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031750 | chr7:103031836-103067306 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103047000-103053800 | Weak transcription | Gastric | stomach |
| 2 | chr7:103047400-103053000 | Weak transcription | Stomach Mucosa | stomach |
| 3 | chr7:103048400-103051800 | Weak transcription | K562 | blood |
