Variant report

Variant	rs6944809
Chromosome Location	chr7:102769880-102769881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:
2	chr7:102768661..102770916-chr7:102788853..102790814,2	MCF-7	breast:
3	chr7:102767416..102772548-chr7:102787742..102792429,7	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:121)

rs_ID	r²[population]
rs10229137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10230292	1.00[EUR][1000 genomes]
rs10240086	1.00[EUR][1000 genomes]
rs10260344	1.00[EUR][1000 genomes]
rs10264869	1.00[EUR][1000 genomes]
rs10268112	1.00[EUR][1000 genomes]
rs10268849	1.00[EUR][1000 genomes]
rs10808123	1.00[EUR][1000 genomes]
rs10808124	1.00[EUR][1000 genomes]
rs10808125	1.00[EUR][1000 genomes]
rs10808127	1.00[EUR][1000 genomes]
rs11560367	1.00[EUR][1000 genomes]
rs11760826	1.00[EUR][1000 genomes]
rs11765948	1.00[EUR][1000 genomes]
rs11772979	1.00[EUR][1000 genomes]
rs11773883	1.00[EUR][1000 genomes]
rs11981558	1.00[EUR][1000 genomes]
rs12155099	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12539639	1.00[EUR][1000 genomes]
rs13225565	1.00[EUR][1000 genomes]
rs13226097	1.00[EUR][1000 genomes]
rs13242079	1.00[EUR][1000 genomes]
rs13247932	1.00[EUR][1000 genomes]
rs1404213	1.00[EUR][1000 genomes]
rs1477159	1.00[EUR][1000 genomes]
rs1477161	1.00[EUR][1000 genomes]
rs1477162	1.00[EUR][1000 genomes]
rs1477163	1.00[EUR][1000 genomes]
rs1558853	1.00[EUR][1000 genomes]
rs1861725	1.00[EUR][1000 genomes]
rs1861726	1.00[EUR][1000 genomes]
rs1861728	1.00[EUR][1000 genomes]
rs1861730	1.00[EUR][1000 genomes]
rs1861732	1.00[EUR][1000 genomes]
rs1968198	1.00[EUR][1000 genomes]
rs1968199	1.00[EUR][1000 genomes]
rs1968202	1.00[EUR][1000 genomes]
rs1974715	1.00[EUR][1000 genomes]
rs1974716	1.00[EUR][1000 genomes]
rs2015289	1.00[EUR][1000 genomes]
rs2041949	1.00[EUR][1000 genomes]
rs2098447	1.00[EUR][1000 genomes]
rs2111381	1.00[EUR][1000 genomes]
rs2193418	1.00[EUR][1000 genomes]
rs2411079	1.00[EUR][1000 genomes]
rs2411081	1.00[EUR][1000 genomes]
rs2411082	1.00[EUR][1000 genomes]
rs2898640	1.00[EUR][1000 genomes]
rs3181009	1.00[EUR][1000 genomes]
rs3987889	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4295594	1.00[EUR][1000 genomes]
rs4530973	1.00[EUR][1000 genomes]
rs4727560	1.00[EUR][1000 genomes]
rs4727561	1.00[EUR][1000 genomes]
rs4729868	1.00[EUR][1000 genomes]
rs4729869	1.00[EUR][1000 genomes]
rs4729870	1.00[EUR][1000 genomes]
rs4729871	1.00[EUR][1000 genomes]
rs4729872	1.00[EUR][1000 genomes]
rs4729875	1.00[EUR][1000 genomes]
rs4729876	1.00[EUR][1000 genomes]
rs4729878	1.00[EUR][1000 genomes]
rs4729882	1.00[EUR][1000 genomes]
rs4729883	1.00[EUR][1000 genomes]
rs4729884	1.00[EUR][1000 genomes]
rs4729892	1.00[EUR][1000 genomes]
rs56938507	1.00[EUR][1000 genomes]
rs59179196	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59182081	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60006777	1.00[EUR][1000 genomes]
rs61187383	1.00[EUR][1000 genomes]
rs62622397	1.00[EUR][1000 genomes]
rs6465891	1.00[EUR][1000 genomes]
rs6465892	1.00[EUR][1000 genomes]
rs6465898	1.00[EUR][1000 genomes]
rs6465902	1.00[EUR][1000 genomes]
rs6465905	1.00[EUR][1000 genomes]
rs6465907	1.00[EUR][1000 genomes]
rs6465911	1.00[EUR][1000 genomes]
rs6945578	1.00[EUR][1000 genomes]
rs6946968	1.00[EUR][1000 genomes]
rs6946989	1.00[EUR][1000 genomes]
rs6947777	1.00[EUR][1000 genomes]
rs6950177	1.00[EUR][1000 genomes]
rs6955436	1.00[EUR][1000 genomes]
rs6959711	1.00[EUR][1000 genomes]
rs6964822	1.00[EUR][1000 genomes]
rs6966872	1.00[EUR][1000 genomes]
rs6966961	1.00[EUR][1000 genomes]
rs6973702	1.00[EUR][1000 genomes]
rs6973787	1.00[EUR][1000 genomes]
rs6976034	1.00[EUR][1000 genomes]
rs6976290	1.00[EUR][1000 genomes]
rs6976794	1.00[EUR][1000 genomes]
rs6977206	1.00[EUR][1000 genomes]
rs6979140	1.00[EUR][1000 genomes]
rs6979470	1.00[EUR][1000 genomes]
rs73408251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73408254	1.00[EUR][1000 genomes]
rs73408255	1.00[EUR][1000 genomes]
rs73408259	1.00[EUR][1000 genomes]
rs73408285	1.00[EUR][1000 genomes]
rs73408286	1.00[EUR][1000 genomes]
rs73410119	1.00[EUR][1000 genomes]
rs73410129	1.00[EUR][1000 genomes]
rs73410143	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73412168	1.00[EUR][1000 genomes]
rs73412171	1.00[EUR][1000 genomes]
rs73412175	1.00[EUR][1000 genomes]
rs7349957	1.00[EUR][1000 genomes]
rs7350051	1.00[EUR][1000 genomes]
rs7782147	1.00[EUR][1000 genomes]
rs7783856	1.00[EUR][1000 genomes]
rs7784337	1.00[EUR][1000 genomes]
rs7792240	1.00[EUR][1000 genomes]
rs7807900	1.00[EUR][1000 genomes]
rs7811224	1.00[EUR][1000 genomes]
rs9640672	1.00[EUR][1000 genomes]
rs9641307	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9641308	1.00[EUR][1000 genomes]
rs9691829	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102717600-102770200	Weak transcription	Small Intestine	intestine
2	chr7:102724000-102770200	Weak transcription	Psoas Muscle	Psoas
3	chr7:102725200-102770200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:102725800-102770000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:102734200-102770600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:102741400-102770600	Weak transcription	HUVEC	blood vessel
8	chr7:102743600-102770200	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:102754000-102770400	Weak transcription	NHLF	lung
13	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
14	chr7:102754400-102771800	Weak transcription	NHEK	skin
15	chr7:102755200-102770000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:102755200-102772000	Weak transcription	HMEC	breast
17	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr7:102760200-102770200	Weak transcription	Aorta	Aorta
19	chr7:102760600-102771800	Weak transcription	Esophagus	oesophagus
20	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:102760600-102782200	Weak transcription	HSMM	muscle
22	chr7:102760800-102770200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr7:102762000-102770400	Weak transcription	Placenta	Placenta
24	chr7:102763400-102770800	Weak transcription	Colonic Mucosa	Colon
25	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:102765600-102770200	Weak transcription	HepG2	liver
28	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
29	chr7:102768600-102774200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr7:102768800-102770000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:102768800-102770200	Weak transcription	Fetal Lung	lung
32	chr7:102768800-102770200	Weak transcription	Ovary	ovary
33	chr7:102768800-102770200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr7:102768800-102771000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr7:102768800-102771800	Weak transcription	Fetal Stomach	stomach
36	chr7:102768800-102772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:102768800-102773400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:102768800-102773600	Weak transcription	Spleen	Spleen
39	chr7:102768800-102775200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr7:102768800-102775600	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr7:102768800-102775800	Weak transcription	Gastric	stomach
42	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea
45	chr7:102768800-102786000	Weak transcription	Brain Germinal Matrix	brain
46	chr7:102768800-102786200	Weak transcription	Fetal Heart	heart
47	chr7:102768800-102786600	Weak transcription	Lung	lung
48	chr7:102768800-102788600	Weak transcription	Right Ventricle	heart
49	chr7:102769000-102770000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:102769000-102770200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links