Variant report

Variant	rs2411081
Chromosome Location	chr7:102770880-102770881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:23262017..23262871-chr7:102770254..102770890,2	MCF-7	breast:
2	chr7:102761173..102767210-chr7:102768594..102775189,9	K562	blood:
3	chr7:102770229..102775157-chr7:102775428..102783246,10	K562	blood:
4	chr7:102768661..102770916-chr7:102788853..102790814,2	MCF-7	breast:
5	chr7:102767416..102772548-chr7:102787742..102792429,7	K562	blood:

Variant related genes	Relation type
ENSG00000161048	Chromatin interaction
ENSG00000224415	Chromatin interaction

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10229137	1.00[EUR][1000 genomes]
rs10230292	1.00[EUR][1000 genomes]
rs10232494	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10240086	1.00[EUR][1000 genomes]
rs10260344	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10264869	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10268112	1.00[EUR][1000 genomes]
rs10268849	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10808123	1.00[EUR][1000 genomes]
rs10808124	1.00[EUR][1000 genomes]
rs10808125	1.00[EUR][1000 genomes]
rs10808127	1.00[EUR][1000 genomes]
rs11560367	1.00[EUR][1000 genomes]
rs11760826	1.00[EUR][1000 genomes]
rs11765948	1.00[EUR][1000 genomes]
rs11772979	1.00[EUR][1000 genomes]
rs11773883	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11981558	1.00[EUR][1000 genomes]
rs12155099	1.00[EUR][1000 genomes]
rs12539639	1.00[EUR][1000 genomes]
rs13225565	1.00[EUR][1000 genomes]
rs13226097	1.00[EUR][1000 genomes]
rs13242079	1.00[EUR][1000 genomes]
rs13247932	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1404213	1.00[EUR][1000 genomes]
rs1477159	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477160	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1477161	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1477162	1.00[EUR][1000 genomes]
rs1477163	1.00[EUR][1000 genomes]
rs1558853	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1861725	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1861726	1.00[EUR][1000 genomes]
rs1861728	1.00[EUR][1000 genomes]
rs1861730	1.00[EUR][1000 genomes]
rs1861732	1.00[EUR][1000 genomes]
rs1968198	1.00[EUR][1000 genomes]
rs1968199	1.00[EUR][1000 genomes]
rs1968202	1.00[EUR][1000 genomes]
rs1974715	1.00[EUR][1000 genomes]
rs1974716	1.00[EUR][1000 genomes]
rs2015289	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2041949	1.00[EUR][1000 genomes]
rs2098447	1.00[EUR][1000 genomes]
rs2111381	1.00[EUR][1000 genomes]
rs2193418	1.00[EUR][1000 genomes]
rs2411079	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411082	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898640	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3181009	1.00[EUR][1000 genomes]
rs4295594	1.00[EUR][1000 genomes]
rs4530973	1.00[EUR][1000 genomes]
rs4727560	1.00[EUR][1000 genomes]
rs4727561	1.00[EUR][1000 genomes]
rs4729868	1.00[EUR][1000 genomes]
rs4729869	1.00[EUR][1000 genomes]
rs4729870	1.00[EUR][1000 genomes]
rs4729871	1.00[EUR][1000 genomes]
rs4729872	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs4729875	1.00[EUR][1000 genomes]
rs4729876	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729878	1.00[EUR][1000 genomes]
rs4729882	1.00[EUR][1000 genomes]
rs4729883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729884	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4729892	1.00[EUR][1000 genomes]
rs56938507	1.00[EUR][1000 genomes]
rs59179196	1.00[EUR][1000 genomes]
rs59182081	1.00[EUR][1000 genomes]
rs60006777	1.00[EUR][1000 genomes]
rs61187383	1.00[EUR][1000 genomes]
rs62622397	1.00[EUR][1000 genomes]
rs6465891	1.00[EUR][1000 genomes]
rs6465892	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465898	1.00[EUR][1000 genomes]
rs6465902	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465905	1.00[EUR][1000 genomes]
rs6465907	1.00[EUR][1000 genomes]
rs6465911	1.00[EUR][1000 genomes]
rs6944809	1.00[EUR][1000 genomes]
rs6945578	1.00[EUR][1000 genomes]
rs6946968	1.00[EUR][1000 genomes]
rs6946989	1.00[EUR][1000 genomes]
rs6947777	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6950177	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6955436	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6959711	1.00[EUR][1000 genomes]
rs6964822	1.00[EUR][1000 genomes]
rs6966872	1.00[EUR][1000 genomes]
rs6966961	1.00[EUR][1000 genomes]
rs6973702	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6973787	1.00[EUR][1000 genomes]
rs6976034	1.00[EUR][1000 genomes]
rs6976290	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976794	1.00[EUR][1000 genomes]
rs6977206	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6979140	1.00[EUR][1000 genomes]
rs6979470	1.00[EUR][1000 genomes]
rs73408251	1.00[EUR][1000 genomes]
rs73408254	1.00[EUR][1000 genomes]
rs73408255	1.00[EUR][1000 genomes]
rs73408259	1.00[EUR][1000 genomes]
rs73408285	1.00[EUR][1000 genomes]
rs73408286	1.00[EUR][1000 genomes]
rs73410119	1.00[EUR][1000 genomes]
rs73410129	1.00[EUR][1000 genomes]
rs73410143	1.00[EUR][1000 genomes]
rs73412168	1.00[EUR][1000 genomes]
rs73412171	1.00[EUR][1000 genomes]
rs73412175	1.00[EUR][1000 genomes]
rs7349957	1.00[EUR][1000 genomes]
rs7350051	1.00[EUR][1000 genomes]
rs7782147	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7783856	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7784337	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7792240	1.00[EUR][1000 genomes]
rs7807900	1.00[EUR][1000 genomes]
rs7811224	1.00[EUR][1000 genomes]
rs952521	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9640672	1.00[EUR][1000 genomes]
rs9641307	1.00[EUR][1000 genomes]
rs9641308	1.00[EUR][1000 genomes]
rs9691829	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102738400-102773600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:102747400-102781800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:102747600-102775200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:102747600-102789200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:102754200-102773600	Weak transcription	HSMMtube	muscle
6	chr7:102754400-102771800	Weak transcription	NHEK	skin
7	chr7:102755200-102772000	Weak transcription	HMEC	breast
8	chr7:102755600-102775400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:102760600-102771800	Weak transcription	Esophagus	oesophagus
10	chr7:102760600-102782000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr7:102760600-102782200	Weak transcription	HSMM	muscle
12	chr7:102764000-102781800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:102764200-102787000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:102767200-102786000	Weak transcription	GM12878-XiMat	blood
15	chr7:102768600-102774200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:102768800-102771000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:102768800-102771800	Weak transcription	Fetal Stomach	stomach
18	chr7:102768800-102772000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:102768800-102773400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr7:102768800-102773600	Weak transcription	Spleen	Spleen
21	chr7:102768800-102775200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:102768800-102775600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr7:102768800-102775800	Weak transcription	Gastric	stomach
24	chr7:102768800-102781800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr7:102768800-102782000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:102768800-102782000	Weak transcription	Pancreas	Pancrea
27	chr7:102768800-102786000	Weak transcription	Brain Germinal Matrix	brain
28	chr7:102768800-102786200	Weak transcription	Fetal Heart	heart
29	chr7:102768800-102786600	Weak transcription	Lung	lung
30	chr7:102768800-102788600	Weak transcription	Right Ventricle	heart
31	chr7:102769000-102771800	Weak transcription	Fetal Intestine Small	intestine
32	chr7:102769000-102774200	Weak transcription	NH-A	brain
33	chr7:102769000-102775200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr7:102769000-102775200	Weak transcription	NHDF-Ad	bronchial
35	chr7:102769000-102775400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:102769000-102775400	Weak transcription	Fetal Brain Female	brain
37	chr7:102769000-102775800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:102769000-102775800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:102769000-102781400	Weak transcription	Dnd41	blood
40	chr7:102769000-102782000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:102769000-102786000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:102769000-102786000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr7:102769000-102786000	Weak transcription	Fetal Brain Male	brain
44	chr7:102769000-102786600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr7:102769000-102786800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:102769000-102787000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:102769200-102771200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr7:102769200-102771600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr7:102769200-102771800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr7:102769200-102772600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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