Variant report

Variant	rs6947209
Chromosome Location	chr7:101804543-101804544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:101804526-101804589	GM10266	blood:	n/a	n/a
2	POLR2A	chr7:101804520-101804566	HepG2	liver:	n/a	n/a
3	CTCF	chr7:101804540-101804605	GM10248	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ALKBH4-9	chr7:101804400-101804617	NONHSAT122477

Variant related genes	Relation type
ENSG00000258040	TF binding region

rs_ID	r²[population]
rs10265187	1.00[EUR][1000 genomes]
rs10281876	1.00[EUR][1000 genomes]
rs1089797	1.00[EUR][1000 genomes]
rs13437919	1.00[EUR][1000 genomes]
rs1734770	1.00[EUR][1000 genomes]
rs2141041	1.00[EUR][1000 genomes]
rs59722059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6465856	1.00[EUR][1000 genomes]
rs6465857	1.00[EUR][1000 genomes]
rs73712461	1.00[EUR][1000 genomes]
rs7783885	1.00[EUR][1000 genomes]
rs7811790	1.00[EUR][1000 genomes]
rs803068	1.00[EUR][1000 genomes]
rs803100	1.00[EUR][1000 genomes]
rs803101	1.00[EUR][1000 genomes]
rs803107	1.00[EUR][1000 genomes]
rs803108	1.00[EUR][1000 genomes]
rs803110	1.00[EUR][1000 genomes]
rs803113	1.00[EUR][1000 genomes]
rs803116	1.00[EUR][1000 genomes]

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:101777400-101812800	Weak transcription	Fetal Lung	lung
2	chr7:101778400-101812000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:101784800-101814400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:101784800-101821600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr7:101784800-101822600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr7:101789800-101812800	Weak transcription	Brain Angular Gyrus	brain
7	chr7:101790600-101811400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:101790800-101806600	Weak transcription	Psoas Muscle	Psoas
9	chr7:101790800-101811800	Weak transcription	Osteobl	bone
10	chr7:101790800-101812600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:101791000-101812000	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:101793200-101806600	Weak transcription	Colonic Mucosa	Colon
13	chr7:101793800-101812600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:101794800-101816800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:101796000-101810800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr7:101797000-101806000	Weak transcription	Spleen	Spleen
17	chr7:101797000-101814200	Weak transcription	Hela-S3	cervix
18	chr7:101797200-101805200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:101797200-101806000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr7:101797200-101806000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:101797200-101806200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr7:101797200-101807200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:101797200-101807600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:101797200-101807600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:101797200-101808000	Weak transcription	NHLF	lung
26	chr7:101797200-101812000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:101797200-101812600	Weak transcription	Stomach Mucosa	stomach
28	chr7:101797200-101812800	Weak transcription	Brain Germinal Matrix	brain
29	chr7:101797200-101812800	Weak transcription	HSMM	muscle
30	chr7:101797200-101814000	Weak transcription	GM12878-XiMat	blood
31	chr7:101797200-101818400	Weak transcription	Colon Smooth Muscle	Colon
32	chr7:101797200-101818600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:101797200-101821400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:101797200-101827800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr7:101797200-101832000	Weak transcription	Fetal Heart	heart
36	chr7:101797400-101806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:101797400-101806800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:101797400-101807000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr7:101797400-101807200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr7:101797400-101809600	Weak transcription	HSMMtube	muscle
41	chr7:101797400-101811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr7:101797800-101852200	Weak transcription	NHEK	skin
43	chr7:101798000-101807000	Strong transcription	Dnd41	blood
44	chr7:101798200-101812800	Weak transcription	Brain Anterior Caudate	brain
45	chr7:101798400-101809400	Weak transcription	Fetal Brain Female	brain
46	chr7:101798600-101812600	Weak transcription	Brain Cingulate Gyrus	brain
47	chr7:101799200-101804600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr7:101799800-101812600	Weak transcription	Fetal Kidney	kidney
49	chr7:101799800-101815000	Weak transcription	K562	blood
50	chr7:101800000-101804600	Strong transcription	Primary monocytes fromperipheralblood	blood

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