Variant report

Variant	rs6416169
Chromosome Location	chr11:16905311-16905312
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16841547..16842503-chr11:16904428..16905369,3	MCF-7	breast:
2	chr11:16902656..16905634-chr11:17097144..17099414,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201403	Chromatin interaction
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7949833	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16898400-16908400	Weak transcription	HepG2	liver
2	chr11:16900200-16905400	Enhancers	Stomach Mucosa	stomach
3	chr11:16900600-16905800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:16900800-16905800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:16902000-16905800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:16903200-16908800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:16903400-16906400	Enhancers	HMEC	breast
8	chr11:16903600-16908800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
10	chr11:16904200-16905600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:16904200-16906600	Enhancers	Fetal Heart	heart
12	chr11:16904400-16905400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:16904600-16905400	Enhancers	Adipose Nuclei	Adipose
14	chr11:16904600-16905400	Enhancers	K562	blood
15	chr11:16904600-16905800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:16904800-16905400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr11:16904800-16905400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:16904800-16905400	Enhancers	Fetal Lung	lung
19	chr11:16905000-16905400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr11:16905200-16905400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:16905200-16909000	Weak transcription	Esophagus	oesophagus
22	chr11:16905200-16909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:16905200-16909200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:16905200-16913600	Weak transcription	Gastric	stomach
25	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea

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