Variant report

Variant	rs7949833
Chromosome Location	chr11:16939749-16939750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16938600..16942869-chr11:16945668..16948073,6	MCF-7	breast:
2	chr11:16939336..16941584-chr11:16944195..16948360,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11024083	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs12418493	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs6416169	0.83[AFR][1000 genomes]
rs6486325	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs7394865	1.00[CEU][hapmap]
rs7944962	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927800-16944400	Weak transcription	A549	lung
4	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
5	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr11:16934600-16941400	Weak transcription	Liver	Liver
8	chr11:16934600-16942200	Weak transcription	Ovary	ovary
9	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart
10	chr11:16936800-16944400	Weak transcription	Right Atrium	heart
11	chr11:16936800-16944400	Weak transcription	Right Ventricle	heart
12	chr11:16938400-16943400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16939000-16940800	Enhancers	Pancreas	Pancrea
14	chr11:16939000-16941000	Enhancers	NHEK	skin
15	chr11:16939000-16941200	Enhancers	Placenta	Placenta
16	chr11:16939000-16941400	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:16939000-16941600	Enhancers	Fetal Heart	heart
18	chr11:16939000-16941800	Enhancers	HMEC	breast
19	chr11:16939200-16940000	Enhancers	Gastric	stomach
20	chr11:16939200-16940400	Enhancers	Fetal Intestine Small	intestine
21	chr11:16939200-16941000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:16939200-16941600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:16939200-16945000	Enhancers	Stomach Mucosa	stomach
24	chr11:16939200-16945400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr11:16939400-16940000	Enhancers	HUVEC	blood vessel
26	chr11:16939400-16940200	Enhancers	Fetal Intestine Large	intestine
27	chr11:16939400-16940800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:16939400-16941000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr11:16939400-16944800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr11:16939600-16940800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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