Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11024083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824348	1.00[JPT][hapmap]
rs12418493	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708338	1.00[JPT][hapmap]
rs12785711	1.00[JPT][hapmap]
rs12787236	1.00[JPT][hapmap]
rs12795133	1.00[JPT][hapmap]
rs12802357	1.00[JPT][hapmap]
rs12806040	1.00[JPT][hapmap]
rs6486322	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6486323	0.83[EUR][1000 genomes]
rs6486324	0.83[EUR][1000 genomes]
rs7123174	1.00[JPT][hapmap]
rs7394448	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394466	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394865	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7395923	0.83[EUR][1000 genomes]
rs7396550	0.83[EUR][1000 genomes]
rs7926072	1.00[JPT][hapmap]
rs7933299	1.00[JPT][hapmap]
rs7943517	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7944146	1.00[JPT][hapmap]
rs7944962	1.00[CEU][hapmap]
rs7947201	1.00[JPT][hapmap]
rs7949833	1.00[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16947600-16955400	Weak transcription	Gastric	stomach
2	chr11:16947800-16954200	Weak transcription	Pancreas	Pancrea
3	chr11:16948000-16954200	Weak transcription	Ovary	ovary
4	chr11:16948200-16959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:16948400-16967800	Weak transcription	HepG2	liver
6	chr11:16948600-16954800	Weak transcription	Left Ventricle	heart
7	chr11:16948600-16954800	Weak transcription	Right Atrium	heart
8	chr11:16948600-16955400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:16949400-16957400	Weak transcription	A549	lung
11	chr11:16949800-16954200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:16949800-16954600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:16950200-16954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:16951200-16955000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr11:16951200-16958000	Weak transcription	Fetal Intestine Large	intestine
16	chr11:16951600-16954600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:16951800-16957000	Strong transcription	Fetal Intestine Small	intestine
18	chr11:16952200-16954600	Enhancers	Fetal Heart	heart
19	chr11:16953200-16953800	Weak transcription	Stomach Mucosa	stomach

Quick Search: