Variant report

Variant	rs7123174
Chromosome Location	chr11:16911431-16911432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10832696	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs10832697	0.83[EUR][1000 genomes]
rs11024065	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs11024075	0.83[EUR][1000 genomes]
rs11024083	1.00[JPT][hapmap]
rs11824348	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12364529	0.80[CEU][hapmap];0.83[EUR][1000 genomes]
rs12418493	1.00[JPT][hapmap]
rs12708338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12787236	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs12795133	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12802357	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12806040	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2058160	1.00[JPT][hapmap]
rs34670733	0.88[ASN][1000 genomes]
rs34760218	0.88[ASN][1000 genomes]
rs35677666	0.88[ASN][1000 genomes]
rs35865759	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6486323	0.88[ASN][1000 genomes]
rs6486324	0.88[ASN][1000 genomes]
rs6486325	1.00[JPT][hapmap]
rs71484736	0.88[ASN][1000 genomes]
rs72864081	0.83[EUR][1000 genomes]
rs72864087	0.83[EUR][1000 genomes]
rs72865722	0.81[EUR][1000 genomes]
rs7394448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7394466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7394865	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7395923	0.88[ASN][1000 genomes]
rs7396550	0.88[ASN][1000 genomes]
rs7926072	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931313	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7933299	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7944146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7947201	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv825770	chr11:16908083-16912537	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16905200-16913600	Weak transcription	Gastric	stomach
3	chr11:16905200-16913600	Weak transcription	Pancreas	Pancrea
4	chr11:16908000-16911600	Weak transcription	Fetal Heart	heart
5	chr11:16910000-16913600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:16910000-16917800	Weak transcription	Lung	lung
7	chr11:16911200-16912200	ZNF genes & repeats	A549	lung
8	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
9	chr11:16911400-16912000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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