Variant report

Variant	rs10832696
Chromosome Location	chr11:16920570-16920571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10832697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10832703	1.00[CHD][hapmap]
rs11024053	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024065	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024075	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601588	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362925	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap]
rs12364529	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12708338	0.88[CEU][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs2058160	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs217750	1.00[CHD][hapmap]
rs35865759	0.87[EUR][1000 genomes]
rs59258722	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123174	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs72864081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865706	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739936	1.00[CHD][hapmap]
rs7931313	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10832696	TSG101	cis	cerebellum	SCAN
rs10832696	TEAD1	cis	parietal	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16912200-16923600	Weak transcription	A549	lung
2	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
3	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
4	chr11:16914600-16921200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr11:16915800-16921400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:16915800-16921400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:16915800-16922800	Weak transcription	HMEC	breast
8	chr11:16916000-16923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
11	chr11:16917800-16922000	Enhancers	Stomach Mucosa	stomach
12	chr11:16918200-16922400	Enhancers	Fetal Intestine Large	intestine
13	chr11:16918200-16924800	Weak transcription	Colonic Mucosa	Colon
14	chr11:16918400-16920600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr11:16918600-16922000	Enhancers	Duodenum Mucosa	Duodenum
16	chr11:16919200-16921400	Weak transcription	Pancreas	Pancrea
17	chr11:16919400-16921400	Weak transcription	Gastric	stomach
18	chr11:16919400-16922400	Enhancers	Fetal Intestine Small	intestine
19	chr11:16919400-16927000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:16919600-16921400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:16919600-16921800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:16919600-16923200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:16919600-16924200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:16919600-16925400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:16919800-16920600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
26	chr11:16919800-16920600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr11:16919800-16921200	Weak transcription	Fetal Lung	lung
28	chr11:16919800-16922000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
30	chr11:16920000-16922200	Enhancers	Liver	Liver
31	chr11:16920000-16924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:16920000-16924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:16920200-16921200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:16920200-16921400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:16920200-16924200	Weak transcription	Adipose Nuclei	Adipose
36	chr11:16920400-16921200	Weak transcription	HepG2	liver
37	chr11:16920400-16921400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:16920400-16921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:16920400-16921400	Weak transcription	Left Ventricle	heart
40	chr11:16920400-16921400	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:16920400-16922200	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr11:16920400-16923000	Weak transcription	GM12878-XiMat	blood
43	chr11:16920400-16923200	Weak transcription	Small Intestine	intestine
44	chr11:16920400-16923600	Weak transcription	HUVEC	blood vessel
45	chr11:16920400-16924600	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr11:16920400-16927000	Weak transcription	Right Atrium	heart

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