Variant report

Variant	rs7931313
Chromosome Location	chr11:16914368-16914369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16912383..16915251-chr11:16918244..16921230,3	K562	blood:
2	chr11:16912383..16915657-chr11:16918244..16920114,3	K562	blood:
3	chr11:16910866..16914588-chr11:16915188..16918653,3	MCF-7	breast:
4	chr11:16913445..16915205-chr11:17097801..17099335,3	MCF-7	breast:
5	chr11:16883507..16885093-chr11:16913908..16916539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10832696	0.83[EUR][1000 genomes]
rs10832697	0.83[EUR][1000 genomes]
rs11024065	0.82[EUR][1000 genomes]
rs11024075	0.83[EUR][1000 genomes]
rs11824348	0.88[ASN][1000 genomes]
rs12364529	0.83[EUR][1000 genomes]
rs12708338	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785711	0.88[ASN][1000 genomes]
rs12787236	0.88[ASN][1000 genomes]
rs12795133	0.88[ASN][1000 genomes]
rs34670733	0.88[ASN][1000 genomes]
rs34760218	0.88[ASN][1000 genomes]
rs35677666	0.88[ASN][1000 genomes]
rs35865759	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486322	0.88[ASN][1000 genomes]
rs6486323	0.88[ASN][1000 genomes]
rs6486324	0.88[ASN][1000 genomes]
rs7123174	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484736	0.88[ASN][1000 genomes]
rs72864081	0.83[EUR][1000 genomes]
rs72864087	0.83[EUR][1000 genomes]
rs72865722	0.81[EUR][1000 genomes]
rs7394448	0.88[ASN][1000 genomes]
rs7394466	0.88[ASN][1000 genomes]
rs7394865	0.88[ASN][1000 genomes]
rs7395923	0.88[ASN][1000 genomes]
rs7396550	0.88[ASN][1000 genomes]
rs7943517	0.88[ASN][1000 genomes]
rs7944146	0.88[ASN][1000 genomes]
rs7947201	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16903600-16914400	Weak transcription	Right Atrium	heart
2	chr11:16910000-16917800	Weak transcription	Lung	lung
3	chr11:16911200-16916000	Enhancers	Stomach Mucosa	stomach
4	chr11:16911600-16914800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16912200-16914400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:16912200-16923600	Weak transcription	A549	lung
7	chr11:16912400-16919400	Weak transcription	Liver	Liver
8	chr11:16912600-16915600	Enhancers	NHDF-Ad	bronchial
9	chr11:16912600-16915800	Enhancers	HMEC	breast
10	chr11:16912600-16916000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:16912600-16916000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:16912800-16914600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr11:16912800-16915600	Enhancers	Osteobl	bone
14	chr11:16913000-16914400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:16913000-16918400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:16913200-16914600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:16913200-16914600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:16913400-16916800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:16913600-16915000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:16913600-16915200	Weak transcription	Spleen	Spleen
21	chr11:16913600-16916000	Enhancers	Pancreas	Pancrea
22	chr11:16913600-16916200	Enhancers	Left Ventricle	heart
23	chr11:16913800-16914400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:16913800-16914400	Weak transcription	Gastric	stomach
25	chr11:16913800-16914800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr11:16913800-16915000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr11:16913800-16915000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:16913800-16915000	Weak transcription	Adipose Nuclei	Adipose
29	chr11:16913800-16915000	Weak transcription	Esophagus	oesophagus
30	chr11:16913800-16916400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:16913800-16921800	Enhancers	Fetal Heart	heart
32	chr11:16914000-16915000	Weak transcription	Placenta	Placenta
33	chr11:16914000-16915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:16914000-16917000	Weak transcription	HSMM	muscle
35	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
36	chr11:16914200-16916000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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