The 2.0 version of rSNPBase

Variant report

Variant rs35677666
Chromosome Location chr11:16895019-16895020
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:16872000-16895800 Weak transcription Aorta Aorta
2 chr11:16876800-16898600 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr11:16877800-16899600 Weak transcription Stomach Smooth Muscle stomach
4 chr11:16882400-16895800 Weak transcription Gastric stomach
5 chr11:16882600-16898400 Weak transcription Ovary ovary
6 chr11:16884600-16897600 Weak transcription Brain Hippocampus Middle brain
7 chr11:16884800-16897600 Weak transcription Brain Anterior Caudate brain
8 chr11:16884800-16900000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr11:16885000-16900200 Weak transcription Stomach Mucosa stomach
10 chr11:16885200-16902400 Weak transcription H1 Cell Line embryonic stem cell
11 chr11:16885400-16900800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr11:16890200-16895600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr11:16890200-16897600 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr11:16890400-16899000 Weak transcription Adipose Nuclei Adipose
15 chr11:16891000-16900000 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr11:16891000-16900800 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr11:16891000-16901000 Weak transcription Lung lung
18 chr11:16891200-16904600 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr11:16891600-16897600 Enhancers Breast Myoepithelial Primary Cells Breast
20 chr11:16891600-16903600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr11:16891800-16895600 Weak transcription HepG2 liver
22 chr11:16891800-16895800 Weak transcription Fetal Intestine Large intestine
23 chr11:16891800-16899200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr11:16892000-16896000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
25 chr11:16892000-16897400 Weak transcription Placenta Placenta
26 chr11:16892200-16895600 Weak transcription Duodenum Mucosa Duodenum
27 chr11:16892200-16896200 Weak transcription Liver Liver
28 chr11:16892800-16896200 Weak transcription Esophagus oesophagus
29 chr11:16892800-16898400 Enhancers Fetal Heart heart
30 chr11:16893000-16895800 Weak transcription Fetal Intestine Small intestine
31 chr11:16893000-16897200 Weak transcription Placenta Amnion Placenta Amnion
32 chr11:16893400-16896400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
33 chr11:16893400-16897000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr11:16893400-16897400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr11:16893400-16901600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
36 chr11:16893400-16902600 Weak transcription Muscle Satellite Cultured Cells --
37 chr11:16893800-16896000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr11:16893800-16896400 Weak transcription HMEC breast
39 chr11:16894000-16896000 Weak transcription HSMM muscle
40 chr11:16894200-16896800 Enhancers HSMMtube muscle
41 chr11:16894200-16897200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr11:16894600-16895200 Enhancers Left Ventricle heart
43 chr11:16894800-16895200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
44 chr11:16894800-16895200 Enhancers Fetal Stomach stomach
45 chr11:16894800-16895200 Enhancers Right Ventricle heart
46 chr11:16894800-16896000 Enhancers Duodenum Smooth Muscle Duodenum
47 chr11:16894800-16896400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr11:16894800-16896400 Enhancers Pancreas Pancrea
49 chr11:16895000-16895200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
50 chr11:16895000-16896200 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015