Variant report

Variant	rs7396550
Chromosome Location	chr11:16948431-16948432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16947090..16949629-chr11:17095736..17097514,2	MCF-7	breast:
2	chr11:16946793..16948459-chr14:74981920..74983438,2	MCF-7	breast:
3	chr11:16946724..16949715-chr11:17035488..17037274,2	MCF-7	breast:
4	chr11:16947021..16948883-chr11:16954083..16956444,2	MCF-7	breast:
5	chr11:16947321..16948978-chr11:17097717..17099259,2	MCF-7	breast:
6	chr11:16945639..16949520-chr11:16949584..16951727,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184669	Chromatin interaction
ENSG00000166689	Chromatin interaction
ENSG00000110700	Chromatin interaction
ENSG00000201403	Chromatin interaction
ENSG00000272034	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10832700	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11024083	0.83[EUR][1000 genomes]
rs11824348	1.00[ASN][1000 genomes]
rs12418493	0.83[EUR][1000 genomes]
rs12708338	0.88[ASN][1000 genomes]
rs12785711	1.00[ASN][1000 genomes]
rs12787236	1.00[ASN][1000 genomes]
rs12793275	0.88[ASN][1000 genomes]
rs12795133	1.00[ASN][1000 genomes]
rs34441025	0.88[ASN][1000 genomes]
rs34670733	1.00[ASN][1000 genomes]
rs34760218	1.00[ASN][1000 genomes]
rs35677666	1.00[ASN][1000 genomes]
rs35865759	0.88[ASN][1000 genomes]
rs6486322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486325	0.83[EUR][1000 genomes]
rs7123174	0.88[ASN][1000 genomes]
rs71484734	0.81[ASN][1000 genomes]
rs71484736	1.00[ASN][1000 genomes]
rs7394448	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394466	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394865	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7395923	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926072	0.88[ASN][1000 genomes]
rs7931313	0.88[ASN][1000 genomes]
rs7943517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944146	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947201	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16947200-16948600	Bivalent Enhancer	Placenta	Placenta
2	chr11:16947200-16948800	Flanking Active TSS	Hela-S3	cervix
3	chr11:16947400-16948600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:16947400-16948600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
5	chr11:16947400-16948600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:16947600-16948600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:16947600-16948600	Bivalent Enhancer	Fetal Lung	lung
8	chr11:16947600-16948600	Enhancers	Right Ventricle	heart
9	chr11:16947600-16955400	Weak transcription	Gastric	stomach
10	chr11:16947800-16948600	Enhancers	Left Ventricle	heart
11	chr11:16947800-16948600	Enhancers	Right Atrium	heart
12	chr11:16947800-16949200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:16947800-16949400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr11:16947800-16949400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr11:16947800-16949400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:16947800-16949800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:16947800-16951200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr11:16947800-16954200	Weak transcription	Pancreas	Pancrea
19	chr11:16948000-16948600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr11:16948000-16949200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
21	chr11:16948000-16949400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
22	chr11:16948000-16954200	Weak transcription	Ovary	ovary
23	chr11:16948200-16948600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
24	chr11:16948200-16948600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr11:16948200-16948600	Genic enhancers	Fetal Intestine Small	intestine
26	chr11:16948200-16949200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr11:16948200-16949400	Enhancers	K562	blood
28	chr11:16948200-16949800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:16948200-16950200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:16948200-16951200	Enhancers	Fetal Heart	heart
31	chr11:16948200-16959600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:16948400-16948600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:16948400-16949200	Enhancers	Stomach Mucosa	stomach
34	chr11:16948400-16949400	Enhancers	A549	lung
35	chr11:16948400-16950800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:16948400-16967800	Weak transcription	HepG2	liver

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