Variant report

Variant	rs11024083
Chromosome Location	chr11:16961652-16961653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16961300..16963934-chr11:16968843..16971066,2	K562	blood:
2	chr11:16960761..16963314-chr11:17099363..17101117,2	MCF-7	breast:
3	chr11:16960579..16963396-chr11:17035051..17037352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166689	Chromatin interaction
ENSG00000184669	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11824348	1.00[JPT][hapmap]
rs12418493	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708338	1.00[JPT][hapmap]
rs12785711	1.00[JPT][hapmap]
rs12787236	1.00[JPT][hapmap]
rs12795133	1.00[JPT][hapmap]
rs12802357	1.00[JPT][hapmap]
rs12806040	1.00[JPT][hapmap]
rs6486322	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6486323	0.83[EUR][1000 genomes]
rs6486324	0.83[EUR][1000 genomes]
rs6486325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123174	1.00[JPT][hapmap]
rs7394448	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394466	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394865	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7395923	0.83[EUR][1000 genomes]
rs7396550	0.83[EUR][1000 genomes]
rs7926072	1.00[JPT][hapmap]
rs7933299	1.00[JPT][hapmap]
rs7943517	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7944146	1.00[JPT][hapmap]
rs7944962	1.00[CEU][hapmap]
rs7947201	1.00[JPT][hapmap]
rs7949833	1.00[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16948400-16967800	Weak transcription	HepG2	liver
2	chr11:16948600-16967800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16954600-16967400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:16954800-16964200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:16955600-16962400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
7	chr11:16955800-16962400	Weak transcription	Right Ventricle	heart
8	chr11:16955800-16964800	Weak transcription	Left Ventricle	heart
9	chr11:16955800-16967600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:16955800-16967600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:16956000-16963400	Weak transcription	Gastric	stomach
12	chr11:16958400-16967800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr11:16958600-16967800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:16958800-16967600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:16959000-16967000	Weak transcription	Stomach Mucosa	stomach
16	chr11:16960000-16963800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:16961000-16963200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr11:16961000-16965400	Enhancers	Fetal Heart	heart
19	chr11:16961200-16962600	Strong transcription	Fetal Intestine Small	intestine
20	chr11:16961200-16962800	Strong transcription	Fetal Intestine Large	intestine
21	chr11:16961600-16962600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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