Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16971884..16974479-chr11:17097308..17099759,2	K562	blood:
2	chr11:16971713..16981548-chr11:17031573..17039006,21	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11024083	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824348	1.00[JPT][hapmap]
rs12708338	1.00[JPT][hapmap]
rs12785711	1.00[JPT][hapmap]
rs12787236	1.00[JPT][hapmap]
rs12795133	1.00[JPT][hapmap]
rs12802357	1.00[JPT][hapmap]
rs12806040	1.00[JPT][hapmap]
rs6486322	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs6486323	0.83[EUR][1000 genomes]
rs6486324	0.83[EUR][1000 genomes]
rs6486325	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123174	1.00[JPT][hapmap]
rs7394448	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394466	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7394865	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7395923	0.83[EUR][1000 genomes]
rs7396550	0.83[EUR][1000 genomes]
rs7926072	1.00[JPT][hapmap]
rs7933299	1.00[JPT][hapmap]
rs7943517	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7944146	1.00[JPT][hapmap]
rs7944962	1.00[CEU][hapmap]
rs7947201	1.00[JPT][hapmap]
rs7949833	1.00[CEU][hapmap];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7689	chr11:16945953-16990852	Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16955600-16991000	Weak transcription	Right Atrium	heart
2	chr11:16964200-16977800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16964200-16981400	Weak transcription	Gastric	stomach
4	chr11:16965400-16978200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:16968000-16977800	Weak transcription	Pancreas	Pancrea
6	chr11:16968000-16989800	Weak transcription	Esophagus	oesophagus
7	chr11:16968400-16975200	Weak transcription	Fetal Kidney	kidney
8	chr11:16968400-16978200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:16968400-16980000	Weak transcription	Liver	Liver
10	chr11:16968600-16975200	Weak transcription	HepG2	liver
11	chr11:16968600-16975400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:16968800-16977800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr11:16968800-16978000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr11:16968800-16984400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:16971200-16979400	Enhancers	Stomach Mucosa	stomach
16	chr11:16972400-16974600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:16972400-16978000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr11:16973000-16974600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr11:16973000-16977400	Enhancers	Fetal Intestine Small	intestine
20	chr11:16973600-16982600	Enhancers	Fetal Intestine Large	intestine
21	chr11:16974000-16974600	Weak transcription	Fetal Lung	lung

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