Variant report

Variant	rs12802357
Chromosome Location	chr11:16884338-16884339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16882424..16884951-chr11:16885090..16886860,2	MCF-7	breast:
2	chr11:16883507..16885093-chr11:16913908..16916539,2	MCF-7	breast:
3	chr11:16878376..16881248-chr11:16883308..16886375,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11024083	1.00[JPT][hapmap]
rs11824348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12418493	1.00[JPT][hapmap]
rs12708338	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs12785711	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs12786886	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12787236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs12793275	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12795133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12806040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34441025	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34760218	1.00[EUR][1000 genomes]
rs35449646	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35677666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6486322	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6486325	1.00[JPT][hapmap]
rs7123174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs71484734	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7394448	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7394466	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7394865	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7926072	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7933299	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs7943517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7944146	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7947201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16863800-16884800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:16863800-16892600	Weak transcription	Fetal Kidney	kidney
3	chr11:16867800-16885000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
5	chr11:16872200-16884400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:16872600-16889600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:16876200-16888400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:16876600-16889800	Weak transcription	Adipose Nuclei	Adipose
9	chr11:16876600-16890800	Weak transcription	Colonic Mucosa	Colon
10	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:16877800-16890000	Weak transcription	Lung	lung
12	chr11:16877800-16892200	Weak transcription	Fetal Stomach	stomach
13	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:16878000-16889400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:16878800-16890000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr11:16879000-16887600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:16879400-16885000	Enhancers	K562	blood
18	chr11:16880400-16885200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:16880400-16885800	Enhancers	Fetal Muscle Leg	muscle
20	chr11:16881000-16884600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:16881800-16885200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:16882200-16884800	Enhancers	Brain Anterior Caudate	brain
23	chr11:16882200-16888400	Weak transcription	HMEC	breast
24	chr11:16882200-16888600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:16882400-16884400	Weak transcription	Esophagus	oesophagus
26	chr11:16882400-16884800	Weak transcription	Psoas Muscle	Psoas
27	chr11:16882400-16889200	Weak transcription	HepG2	liver
28	chr11:16882400-16894800	Weak transcription	Pancreas	Pancrea
29	chr11:16882400-16895800	Weak transcription	Gastric	stomach
30	chr11:16882600-16884600	Enhancers	Fetal Heart	heart
31	chr11:16882600-16885000	Weak transcription	Fetal Intestine Large	intestine
32	chr11:16882600-16898400	Weak transcription	Ovary	ovary
33	chr11:16883000-16884600	Strong transcription	Fetal Intestine Small	intestine
34	chr11:16883000-16885200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:16883000-16885400	Enhancers	Fetal Muscle Trunk	muscle
36	chr11:16883000-16889600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr11:16883200-16884400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:16883200-16885000	Enhancers	Brain Cingulate Gyrus	brain
39	chr11:16883400-16885000	Enhancers	Stomach Mucosa	stomach
40	chr11:16883400-16885200	Enhancers	Left Ventricle	heart
41	chr11:16883400-16885400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:16883400-16885600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:16883400-16885600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:16883400-16885800	Enhancers	Placenta Amnion	Placenta Amnion
45	chr11:16883600-16884400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:16883600-16884600	Enhancers	Brain Hippocampus Middle	brain
47	chr11:16883600-16884600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr11:16883600-16885400	Enhancers	Placenta	Placenta
49	chr11:16883600-16885400	Enhancers	Right Ventricle	heart
50	chr11:16883600-16885600	Enhancers	Skeletal Muscle Male	skeletal muscle

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