Variant report

Variant	rs7394466
Chromosome Location	chr11:16938083-16938084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16931101..16934600-chr11:16936301..16938112,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10832700	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11024083	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs11824348	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12418493	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs12708338	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12785711	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12787236	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12793275	0.88[ASN][1000 genomes]
rs12795133	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12802357	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12806040	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34441025	0.88[ASN][1000 genomes]
rs34670733	1.00[ASN][1000 genomes]
rs34760218	1.00[ASN][1000 genomes]
rs35677666	1.00[ASN][1000 genomes]
rs35865759	0.88[ASN][1000 genomes]
rs6486322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486324	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6486325	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7123174	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs71484734	0.81[ASN][1000 genomes]
rs71484736	1.00[ASN][1000 genomes]
rs7394448	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7395923	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7396550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926072	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7931313	0.88[ASN][1000 genomes]
rs7933299	1.00[JPT][hapmap]
rs7943517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944146	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7947201	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16925200-16939800	Weak transcription	Colonic Mucosa	Colon
2	chr11:16925600-16939800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:16927600-16939200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:16927800-16939400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:16927800-16944400	Weak transcription	A549	lung
6	chr11:16931400-16944200	Weak transcription	Esophagus	oesophagus
7	chr11:16933000-16939200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:16933200-16939000	Weak transcription	HMEC	breast
9	chr11:16934400-16939400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:16934600-16939400	Weak transcription	Fetal Intestine Large	intestine
11	chr11:16934600-16939800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:16934600-16939800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:16934600-16941400	Weak transcription	Liver	Liver
14	chr11:16934600-16942200	Weak transcription	Ovary	ovary
15	chr11:16935000-16939200	Weak transcription	Gastric	stomach
16	chr11:16935200-16939000	Weak transcription	Pancreas	Pancrea
17	chr11:16935200-16939200	Weak transcription	Stomach Mucosa	stomach
18	chr11:16935200-16942200	Weak transcription	Left Ventricle	heart
19	chr11:16935600-16939200	Weak transcription	Fetal Intestine Small	intestine
20	chr11:16936800-16938200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:16936800-16939000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:16936800-16939000	Weak transcription	Fetal Heart	heart
23	chr11:16936800-16944400	Weak transcription	Right Atrium	heart
24	chr11:16936800-16944400	Weak transcription	Right Ventricle	heart

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