Variant report

Variant	rs11024065
Chromosome Location	chr11:16894783-16894784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16878202..16880013-chr11:16893288..16895132,2	K562	blood:
2	chr11:16892971..16895471-chr11:17099061..17100844,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110700	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10832696	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832697	0.96[EUR][1000 genomes]
rs11024053	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024057	0.83[EUR][1000 genomes]
rs11024075	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601588	0.83[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362925	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs12364529	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs12708338	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs2058160	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35865759	0.85[EUR][1000 genomes]
rs393633	1.00[YRI][hapmap]
rs397373	1.00[YRI][hapmap]
rs407354	1.00[YRI][hapmap]
rs425325	1.00[YRI][hapmap]
rs446518	1.00[YRI][hapmap]
rs59258722	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123174	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs72864021	0.82[EUR][1000 genomes]
rs72864081	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864087	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865706	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931313	0.82[EUR][1000 genomes]
rs7932524	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16872000-16895800	Weak transcription	Aorta	Aorta
2	chr11:16876800-16898600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:16877800-16899600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:16882400-16894800	Weak transcription	Pancreas	Pancrea
5	chr11:16882400-16895800	Weak transcription	Gastric	stomach
6	chr11:16882600-16898400	Weak transcription	Ovary	ovary
7	chr11:16884600-16897600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:16884800-16897600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:16884800-16900000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:16885000-16900200	Weak transcription	Stomach Mucosa	stomach
11	chr11:16885200-16894800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:16885200-16894800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:16885200-16902400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:16885400-16894800	Weak transcription	Right Ventricle	heart
15	chr11:16885400-16900800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:16890200-16895600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:16890200-16897600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:16890400-16899000	Weak transcription	Adipose Nuclei	Adipose
19	chr11:16891000-16900000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:16891000-16900800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:16891000-16901000	Weak transcription	Lung	lung
22	chr11:16891200-16904600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:16891600-16897600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:16891600-16903600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:16891800-16895600	Weak transcription	HepG2	liver
26	chr11:16891800-16895800	Weak transcription	Fetal Intestine Large	intestine
27	chr11:16891800-16899200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:16892000-16896000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:16892000-16897400	Weak transcription	Placenta	Placenta
30	chr11:16892200-16895600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr11:16892200-16896200	Weak transcription	Liver	Liver
32	chr11:16892800-16896200	Weak transcription	Esophagus	oesophagus
33	chr11:16892800-16898400	Enhancers	Fetal Heart	heart
34	chr11:16893000-16895800	Weak transcription	Fetal Intestine Small	intestine
35	chr11:16893000-16897200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr11:16893400-16894800	Weak transcription	Fetal Stomach	stomach
37	chr11:16893400-16896400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:16893400-16897000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:16893400-16897400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:16893400-16901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:16893400-16902600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:16893800-16896000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:16893800-16896400	Weak transcription	HMEC	breast
44	chr11:16894000-16896000	Weak transcription	HSMM	muscle
45	chr11:16894200-16896800	Enhancers	HSMMtube	muscle
46	chr11:16894200-16897200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:16894600-16895200	Enhancers	Left Ventricle	heart

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