Variant report

Variant	rs11024053
Chromosome Location	chr11:16863395-16863396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:16863260-16863410	RPTEC	kidney:	n/a	n/a
2	CTCF	chr11:16863340-16863490	RPTEC	kidney:	n/a	n/a

Variant related genes	Relation type
RN7SKP90	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10832696	0.93[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832697	0.91[EUR][1000 genomes]
rs11024057	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11024065	0.87[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024075	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601588	1.00[CHB][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362925	0.86[CEU][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12364529	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs12708338	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2058160	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35865759	0.81[EUR][1000 genomes]
rs59258722	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864021	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72864081	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72864087	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72865706	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16813200-16871400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:16823000-16871400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:16839200-16878800	Weak transcription	Thymus	Thymus
4	chr11:16842600-16873400	Weak transcription	Hela-S3	cervix
5	chr11:16843000-16874600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:16846600-16874000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:16847000-16864000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:16847000-16871200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:16847200-16871400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:16847800-16865000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:16847800-16871600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:16848200-16871400	Weak transcription	Aorta	Aorta
13	chr11:16848200-16875200	Weak transcription	Right Ventricle	heart
14	chr11:16848400-16866600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:16848400-16878600	Weak transcription	Small Intestine	intestine
16	chr11:16848600-16868400	Weak transcription	HSMMtube	muscle
17	chr11:16849800-16865400	Strong transcription	Fetal Intestine Small	intestine
18	chr11:16849800-16871400	Weak transcription	Pancreas	Pancrea
19	chr11:16850400-16871200	Weak transcription	Fetal Brain Female	brain
20	chr11:16850600-16865600	Weak transcription	Psoas Muscle	Psoas
21	chr11:16850600-16871800	Weak transcription	Colonic Mucosa	Colon
22	chr11:16850800-16870600	Weak transcription	Fetal Brain Male	brain
23	chr11:16853400-16883800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:16854000-16868000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:16855000-16863400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:16855200-16863600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:16855200-16873000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:16855200-16877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:16855200-16878800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:16858000-16876800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:16858200-16871600	Weak transcription	A549	lung
32	chr11:16858200-16878800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:16858400-16876400	Weak transcription	Brain Germinal Matrix	brain
34	chr11:16858800-16863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:16859200-16868800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:16860000-16870000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr11:16861000-16864000	Strong transcription	Fetal Intestine Large	intestine
38	chr11:16861200-16863400	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr11:16861200-16864000	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr11:16861200-16864000	Strong transcription	Stomach Smooth Muscle	stomach
41	chr11:16861200-16864200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:16861200-16879800	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr11:16861400-16863600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:16861400-16863800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr11:16861400-16863800	Strong transcription	Placenta	Placenta
46	chr11:16861400-16864000	Strong transcription	Fetal Stomach	stomach
47	chr11:16861400-16864000	Strong transcription	Ovary	ovary
48	chr11:16861400-16864400	Strong transcription	Liver	Liver
49	chr11:16861400-16865000	Strong transcription	HepG2	liver
50	chr11:16861600-16863400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links