Variant report

Variant	rs10832697
Chromosome Location	chr11:16922404-16922405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16914855..16917197-chr11:16922400..16924904,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10832696	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11024053	0.91[EUR][1000 genomes]
rs11024065	0.96[EUR][1000 genomes]
rs11024075	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11601588	0.94[EUR][1000 genomes]
rs12364529	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12708338	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2058160	0.92[EUR][1000 genomes]
rs35865759	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59258722	0.95[EUR][1000 genomes]
rs7123174	0.83[EUR][1000 genomes]
rs72864081	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72864087	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72865706	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7931313	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832077	chr11:16834545-17059176	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv7688	chr11:16912759-16939804	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2757425	chr11:16915291-16934130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759805	chr11:16915291-16934130	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1038987	chr11:16916438-16927022	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2754709	chr11:16917219-16927022	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16912200-16923600	Weak transcription	A549	lung
2	chr11:16914000-16927400	Weak transcription	HSMMtube	muscle
3	chr11:16915800-16922800	Weak transcription	HMEC	breast
4	chr11:16916000-16923000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16916000-16924400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:16916000-16931000	Weak transcription	Spleen	Spleen
7	chr11:16918200-16924800	Weak transcription	Colonic Mucosa	Colon
8	chr11:16919400-16927000	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:16919600-16923200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr11:16919600-16924200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:16919600-16925400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:16919800-16933600	Weak transcription	Fetal Kidney	kidney
13	chr11:16920000-16924200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:16920000-16924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:16920200-16924200	Weak transcription	Adipose Nuclei	Adipose
16	chr11:16920400-16923000	Weak transcription	GM12878-XiMat	blood
17	chr11:16920400-16923200	Weak transcription	Small Intestine	intestine
18	chr11:16920400-16923600	Weak transcription	HUVEC	blood vessel
19	chr11:16920400-16924600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:16920400-16927000	Weak transcription	Right Atrium	heart
21	chr11:16921200-16922600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr11:16921600-16927000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:16921600-16927200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr11:16921800-16924800	Weak transcription	Left Ventricle	heart
25	chr11:16921800-16926600	Weak transcription	Gastric	stomach
26	chr11:16921800-16926600	Weak transcription	Pancreas	Pancrea
27	chr11:16921800-16927000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:16922000-16923000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:16922000-16923400	Weak transcription	Stomach Mucosa	stomach
30	chr11:16922000-16923600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:16922000-16934000	Weak transcription	HepG2	liver
32	chr11:16922200-16927200	Weak transcription	Fetal Lung	lung
33	chr11:16922400-16923200	Weak transcription	Fetal Intestine Small	intestine
34	chr11:16922400-16923400	Weak transcription	Fetal Intestine Large	intestine
35	chr11:16922400-16923800	Weak transcription	Fetal Heart	heart

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