Variant report

Variant	rs6421689
Chromosome Location	chr11:64265874-64265875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4930392	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6591852	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6591855	0.84[YRI][hapmap]
rs7942093	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64265000-64268000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:64265400-64266800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr11:64265400-64267200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:64265400-64269200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:64265600-64266400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr11:64265800-64266000	Enhancers	Spleen	Spleen
7	chr11:64265800-64266200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:64265800-64266600	Enhancers	K562	blood
9	chr11:64265800-64267600	Enhancers	Fetal Thymus	thymus
10	chr11:64265800-64268200	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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