Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:64255791..64258393-chr11:64259591..64262229,2	K562	blood:
2	chr11:64256445..64261724-chr11:64264321..64268271,6	K562	blood:
3	chr11:64206984..64209864-chr11:64258873..64261595,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10751010	1.00[MEX][hapmap]
rs10751011	1.00[MEX][hapmap]
rs1207462	1.00[MEX][hapmap]
rs1212851	1.00[MEX][hapmap]
rs12294207	1.00[MEX][hapmap]
rs17146119	1.00[MEX][hapmap]
rs17159320	1.00[MEX][hapmap]
rs17159321	1.00[MEX][hapmap]
rs240690	1.00[MEX][hapmap]
rs470348	1.00[MEX][hapmap]
rs475704	1.00[MEX][hapmap]
rs497544	1.00[MEX][hapmap]
rs512926	1.00[MEX][hapmap]
rs519106	1.00[MEX][hapmap]
rs535606	1.00[MEX][hapmap]
rs545819	1.00[MEX][hapmap]
rs558073	1.00[MEX][hapmap]
rs605597	1.00[MEX][hapmap]
rs6421689	0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6591852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591855	0.80[YRI][hapmap]
rs7123003	1.00[MEX][hapmap]
rs7942093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948607	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64259200-64261400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:64259200-64261400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr11:64259800-64261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:64259800-64261600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:64260600-64261400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr11:64261000-64265400	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search: