Variant report

Variant	rs6425000
Chromosome Location	chr1:185673766-185673767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11800973	0.85[AMR][1000 genomes]
rs11804697	1.00[AMR][1000 genomes]
rs11808298	1.00[AMR][1000 genomes]
rs11811612	1.00[AMR][1000 genomes]
rs6663119	1.00[AMR][1000 genomes]
rs6683213	0.85[AMR][1000 genomes]
rs6697950	1.00[AMR][1000 genomes]
rs7512339	1.00[AMR][1000 genomes]
rs7520399	0.85[AMR][1000 genomes]
rs7538878	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185673200-185674000	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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