Variant report

Variant	rs6697950
Chromosome Location	chr1:185618927-185618928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11800973	0.85[AMR][1000 genomes]
rs11804697	1.00[AMR][1000 genomes]
rs11808298	1.00[AMR][1000 genomes]
rs11811612	1.00[AMR][1000 genomes]
rs6425000	1.00[AMR][1000 genomes]
rs6663119	1.00[AMR][1000 genomes]
rs6683213	0.85[AMR][1000 genomes]
rs7512339	1.00[AMR][1000 genomes]
rs7520399	0.85[AMR][1000 genomes]
rs7538878	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185615800-185619400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:185616000-185620000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:185616200-185619800	Weak transcription	Psoas Muscle	Psoas
4	chr1:185616600-185620600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:185617000-185619600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:185617200-185619600	Weak transcription	NHEK	skin
7	chr1:185617200-185619800	Weak transcription	HMEC	breast
8	chr1:185617200-185620200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr1:185617400-185619000	ZNF genes & repeats	Placenta	Placenta
10	chr1:185617400-185619200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr1:185618200-185619400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:185618800-185620000	Enhancers	HepG2	liver
13	chr1:185618800-185620400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr1:185618800-185638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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