Variant report
| Variant | rs6425596 |
|---|---|
| Chromosome Location | chr1:179884092-179884093 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179853000-179884800 | Weak transcription | Esophagus | oesophagus |
| 2 | chr1:179853000-179890400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 3 | chr1:179853200-179886600 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 4 | chr1:179853200-179890800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
| 5 | chr1:179854000-179886800 | Weak transcription | Fetal Heart | heart |
| 6 | chr1:179857600-179886800 | Weak transcription | Psoas Muscle | Psoas |
| 7 | chr1:179860200-179890200 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 8 | chr1:179861200-179886600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 9 | chr1:179861600-179886600 | Weak transcription | Pancreas | Pancrea |
| 10 | chr1:179867200-179886600 | Weak transcription | Small Intestine | intestine |
| 11 | chr1:179867400-179897200 | Weak transcription | Stomach Mucosa | stomach |
| 12 | chr1:179868200-179891600 | Strong transcription | Primary B cells from peripheral blood | blood |
| 13 | chr1:179868200-179891800 | Strong transcription | Primary T cells fromperipheralblood | blood |
| 14 | chr1:179868400-179888800 | Strong transcription | Adipose Nuclei | Adipose |
| 15 | chr1:179868400-179890600 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 16 | chr1:179868400-179890800 | Strong transcription | Dnd41 | blood |
| 17 | chr1:179868600-179891600 | Strong transcription | Primary monocytes fromperipheralblood | blood |
| 18 | chr1:179868600-179892000 | Strong transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 19 | chr1:179868800-179889000 | Strong transcription | Breast Myoepithelial Primary Cells | Breast |
| 20 | chr1:179868800-179889200 | Strong transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 21 | chr1:179868800-179889600 | Strong transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 22 | chr1:179869000-179888200 | Strong transcription | Primary Natural Killer cells fromperipheralblood | blood |
| 23 | chr1:179869200-179885600 | Strong transcription | Duodenum Mucosa | Duodenum |
| 24 | chr1:179869200-179891600 | Strong transcription | Primary neutrophils fromperipheralblood | blood |
| 25 | chr1:179869400-179889600 | Strong transcription | Primary T helper cells PMA-I stimulated | -- |
| 26 | chr1:179869400-179891400 | Strong transcription | Liver | Liver |
| 27 | chr1:179870000-179890400 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 28 | chr1:179871200-179891000 | Strong transcription | Duodenum Smooth Muscle | Duodenum |
| 29 | chr1:179872000-179886600 | Weak transcription | Brain Angular Gyrus | brain |
| 30 | chr1:179873400-179884600 | Weak transcription | Brain Cingulate Gyrus | brain |
| 31 | chr1:179873400-179891400 | Strong transcription | Monocytes-CD14+_RO01746 | blood |
| 32 | chr1:179873600-179886400 | Weak transcription | HepG2 | liver |
| 33 | chr1:179874000-179886600 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 34 | chr1:179874200-179886600 | Weak transcription | Fetal Brain Female | brain |
| 35 | chr1:179874400-179886800 | Weak transcription | H1 Cell Line | embryonic stem cell |
| 36 | chr1:179874600-179886000 | Weak transcription | Thymus | Thymus |
| 37 | chr1:179875200-179891800 | Strong transcription | Primary B cells from cord blood | blood |
| 38 | chr1:179876000-179891200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 39 | chr1:179877000-179888600 | Strong transcription | Primary T cells effector/memory enriched fromperipheralblood | blood |
| 40 | chr1:179877000-179891600 | Strong transcription | Rectal Mucosa Donor 29 | rectum |
| 41 | chr1:179877200-179888800 | Strong transcription | Placenta | Placenta |
| 42 | chr1:179877200-179889200 | Strong transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 43 | chr1:179877800-179886800 | Weak transcription | NHLF | lung |
| 44 | chr1:179878000-179886800 | Weak transcription | Fetal Kidney | kidney |
| 45 | chr1:179878200-179884400 | Weak transcription | Brain Inferior Temporal Lobe | brain |
| 46 | chr1:179878200-179886600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 47 | chr1:179878800-179886600 | Weak transcription | Aorta | Aorta |
| 48 | chr1:179879000-179886800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 49 | chr1:179879200-179884600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 50 | chr1:179879200-179884600 | Weak transcription | Fetal Stomach | stomach |
