Variant report

Variant	rs6426093
Chromosome Location	chr1:226205007-226205008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2208569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2816322	0.84[ASW][hapmap]
rs3753673	1.00[MEX][hapmap]
rs6661737	1.00[MEX][hapmap]
rs6664668	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv524126	chr1:225973777-226210653	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226203400-226207200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:226204200-226206000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:226204400-226205200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:226204400-226205200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:226204400-226205600	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:226204400-226205600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:226204600-226205200	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:226204600-226205200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:226204600-226210600	Weak transcription	Colonic Mucosa	Colon
10	chr1:226204800-226205200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:226204800-226205200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:226204800-226205200	Enhancers	Pancreas	Pancrea
13	chr1:226204800-226205200	Enhancers	Spleen	Spleen
14	chr1:226205000-226205200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:226205000-226205200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr1:226205000-226208400	Weak transcription	K562	blood
17	chr1:226205000-226209000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links