Variant report

Variant	rs6661737
Chromosome Location	chr1:226106763-226106764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:226025881..226027741-chr1:226105867..226108259,2	K562	blood:
2	chr1:226068854..226071766-chr1:226104975..226107758,2	K562	blood:
3	chr1:226066440..226072029-chr1:226106315..226113044,10	MCF-7	breast:
4	chr1:226092808..226094499-chr1:226106559..226108210,2	MCF-7	breast:
5	chr1:226106739..226108269-chr1:226135055..226137378,2	K562	blood:
6	chr1:226068298..226071251-chr1:226106254..226108786,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196187	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10915902	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10915903	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2295419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28364597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3753673	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3753675	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3820237	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6426093	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv524126	chr1:225973777-226210653	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv873231	chr1:226019653-226134471	Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	esv2762223	chr1:226025175-226201716	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv3335650	chr1:226074720-226125458	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	esv3369235	chr1:226075748-226127738	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv468216	chr1:226078915-226135132	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv549267	chr1:226078915-226135132	Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv535314	chr1:226087226-226128261	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226087000-226107200	Weak transcription	Psoas Muscle	Psoas
2	chr1:226099200-226107200	Weak transcription	HUVEC	blood vessel
3	chr1:226099200-226107600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:226099200-226109000	Weak transcription	Colonic Mucosa	Colon
5	chr1:226099400-226106800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:226099400-226107200	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:226099400-226107400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:226099400-226109800	Weak transcription	Stomach Mucosa	stomach
9	chr1:226099600-226106800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:226099600-226107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:226099600-226107200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr1:226099600-226107400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr1:226099600-226107400	Strong transcription	Fetal Stomach	stomach
14	chr1:226099800-226107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr1:226099800-226107400	Weak transcription	Right Atrium	heart
16	chr1:226099800-226107600	Weak transcription	Fetal Heart	heart
17	chr1:226099800-226107800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:226099800-226108400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:226100200-226107200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr1:226100200-226107400	Strong transcription	Fetal Muscle Leg	muscle
21	chr1:226100200-226107800	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr1:226100400-226110400	Weak transcription	Small Intestine	intestine
23	chr1:226101000-226107200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:226101400-226109000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr1:226101600-226106800	Strong transcription	Stomach Smooth Muscle	stomach
26	chr1:226101600-226107200	Strong transcription	Left Ventricle	heart
27	chr1:226101600-226110400	Strong transcription	Fetal Intestine Small	intestine
28	chr1:226101800-226107600	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr1:226102200-226107200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:226102200-226107200	Strong transcription	Primary T cells from cord blood	blood
31	chr1:226102400-226107400	Strong transcription	Liver	Liver
32	chr1:226102600-226107200	Strong transcription	Skeletal Muscle Male	skeletal muscle
33	chr1:226102800-226107000	Strong transcription	Adipose Nuclei	Adipose
34	chr1:226102800-226111000	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr1:226103200-226106800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr1:226103200-226106800	Strong transcription	Spleen	Spleen
37	chr1:226103400-226107200	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr1:226103400-226107400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr1:226103400-226110200	Strong transcription	Thymus	Thymus
40	chr1:226103600-226107200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:226103600-226107400	Strong transcription	Duodenum Mucosa	Duodenum
42	chr1:226103600-226110000	Strong transcription	Fetal Intestine Large	intestine
43	chr1:226103600-226111200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:226103800-226107200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:226103800-226107600	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr1:226104000-226107200	Weak transcription	Brain Angular Gyrus	brain
47	chr1:226104000-226107200	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr1:226104000-226107200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:226104000-226108800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr1:226104200-226107200	Strong transcription	Primary T cells fromperipheralblood	blood

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