Variant report

Variant	rs6431282
Chromosome Location	chr2:234220157-234220158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10168367	0.87[EUR][1000 genomes]
rs10199833	0.92[EUR][1000 genomes]
rs13427703	0.92[ASN][1000 genomes]
rs1972906	0.87[EUR][1000 genomes]
rs2289473	1.00[ASN][1000 genomes]
rs2304773	0.87[EUR][1000 genomes]
rs28605452	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3762586	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792095	0.92[ASN][1000 genomes]
rs3792104	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792105	0.90[EUR][1000 genomes]
rs61062196	0.87[EUR][1000 genomes]
rs66706635	0.87[EUR][1000 genomes]
rs73116218	0.87[EUR][1000 genomes]
rs73119905	0.87[EUR][1000 genomes]
rs73998327	1.00[ASN][1000 genomes]
rs7588509	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584699	chr2:234182240-234255547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv584700	chr2:234199401-234364426	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234219400-234222600	Enhancers	Primary B cells from peripheral blood	blood
2	chr2:234219600-234222600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:234219800-234220400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr2:234219800-234220400	Enhancers	Spleen	Spleen
5	chr2:234219800-234220600	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links