Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10153945	0.82[AMR][1000 genomes]
rs10168367	0.94[EUR][1000 genomes]
rs10168794	0.84[ASN][1000 genomes]
rs10185174	0.84[ASN][1000 genomes]
rs10199833	0.85[EUR][1000 genomes]
rs13384932	0.84[ASN][1000 genomes]
rs13420976	0.84[ASN][1000 genomes]
rs13427703	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1972906	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2289473	0.92[ASN][1000 genomes]
rs2304773	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28437319	0.84[ASN][1000 genomes]
rs28605452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28657808	0.84[ASN][1000 genomes]
rs3792095	1.00[ASN][1000 genomes]
rs3792104	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792105	0.84[EUR][1000 genomes]
rs56871749	0.84[ASN][1000 genomes]
rs57712949	0.84[ASN][1000 genomes]
rs58222850	0.84[ASN][1000 genomes]
rs61062196	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6431282	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66706635	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6745134	0.84[ASN][1000 genomes]
rs73106630	0.84[ASN][1000 genomes]
rs73116218	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73119905	0.94[EUR][1000 genomes]
rs73998327	0.92[ASN][1000 genomes]
rs7588509	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584699	chr2:234182240-234255547	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv584700	chr2:234199401-234364426	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1002075	chr2:234225979-234277508	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv529419	chr2:234229606-234670426	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234223600-234245400	Weak transcription	Pancreas	Pancrea
2	chr2:234228400-234240000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:234228600-234231400	Enhancers	Fetal Brain Male	brain
4	chr2:234229800-234235000	Enhancers	Primary B cells from cord blood	blood
5	chr2:234229800-234235600	Enhancers	Primary B cells from peripheral blood	blood
6	chr2:234230200-234231800	Enhancers	GM12878-XiMat	blood
7	chr2:234230200-234232800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr2:234230800-234231800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr2:234231200-234232000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr2:234231200-234232000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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