Variant report

Variant	rs6432086
Chromosome Location	chr2:10429727-10429728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10428831..10432863-chr2:10436223..10438943,4	MCF-7	breast:
2	chr2:10428846..10431890-chr2:10441149..10444501,5	MCF-7	breast:
3	chr2:10428722..10433156-chr2:10441282..10444570,6	MCF-7	breast:
4	chr2:10427792..10430069-chr2:10536723..10539558,2	MCF-7	breast:
5	chr2:10417609..10422533-chr2:10427569..10430886,4	K562	blood:

Variant related genes	Relation type
ENSG00000206898	Chromatin interaction
ENSG00000264030	Chromatin interaction
ENSG00000115756	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10803717	0.98[ASN][1000 genomes]
rs2011430	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669570	0.80[EUR][1000 genomes]
rs6432087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7571627	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10423400-10429800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:10426200-10438000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:10426800-10429800	Weak transcription	NHLF	lung
4	chr2:10426800-10430000	Weak transcription	HUVEC	blood vessel
5	chr2:10426800-10437600	Weak transcription	Spleen	Spleen
6	chr2:10427000-10430000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:10427000-10430000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:10427000-10430000	Weak transcription	NHDF-Ad	bronchial
9	chr2:10427200-10430000	Weak transcription	Esophagus	oesophagus
10	chr2:10427400-10429800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:10427400-10429800	Enhancers	NHEK	skin
12	chr2:10427400-10430400	Weak transcription	HSMMtube	muscle
13	chr2:10428000-10429800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:10428000-10429800	Weak transcription	A549	lung
15	chr2:10428600-10430400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:10428800-10430800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr2:10428800-10431000	Enhancers	HMEC	breast
18	chr2:10428800-10431000	Enhancers	Osteobl	bone
19	chr2:10429200-10430600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr2:10429200-10431000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:10429200-10431000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:10429200-10431000	Enhancers	HSMM	muscle
23	chr2:10429400-10430800	Enhancers	Hela-S3	cervix
24	chr2:10429400-10431800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr2:10429600-10430600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:10429600-10430600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr2:10429600-10430600	Enhancers	NH-A	brain
28	chr2:10429600-10436800	Weak transcription	Monocytes-CD14+_RO01746	blood

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