Variant report

Variant	rs6432087
Chromosome Location	chr2:10430672-10430673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10803717	0.98[ASN][1000 genomes]
rs2011430	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669570	0.80[EUR][1000 genomes]
rs6432086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7571627	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873639	chr2:10372061-10475308	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10426200-10438000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:10426800-10437600	Weak transcription	Spleen	Spleen
3	chr2:10428800-10430800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:10428800-10431000	Enhancers	HMEC	breast
5	chr2:10428800-10431000	Enhancers	Osteobl	bone
6	chr2:10429200-10431000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:10429200-10431000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:10429200-10431000	Enhancers	HSMM	muscle
9	chr2:10429400-10430800	Enhancers	Hela-S3	cervix
10	chr2:10429400-10431800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:10429600-10436800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr2:10429800-10430800	Enhancers	A549	lung
13	chr2:10430000-10430800	Enhancers	HUVEC	blood vessel
14	chr2:10430000-10431000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:10430000-10431000	Enhancers	NHDF-Ad	bronchial
16	chr2:10430200-10431000	Enhancers	NHEK	skin
17	chr2:10430200-10435400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr2:10430400-10431000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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