Variant report

Variant	rs6434342
Chromosome Location	chr2:190299431-190299432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10166420	0.91[ASN][1000 genomes]
rs10175108	0.87[ASN][1000 genomes]
rs10188246	0.84[ASN][1000 genomes]
rs10198663	0.87[ASN][1000 genomes]
rs10207812	0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10210634	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10804029	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10931417	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11676905	0.84[ASN][1000 genomes]
rs11677167	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11678414	0.88[ASN][1000 genomes]
rs12613903	0.87[ASN][1000 genomes]
rs12622720	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12623394	0.84[ASN][1000 genomes]
rs12693539	0.96[ASN][1000 genomes]
rs12693540	0.87[ASN][1000 genomes]
rs12994482	0.84[ASN][1000 genomes]
rs13009912	0.91[ASN][1000 genomes]
rs13015207	0.96[ASN][1000 genomes]
rs13018252	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13035381	0.91[ASN][1000 genomes]
rs1356976	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1520854	0.96[ASN][1000 genomes]
rs1520856	0.93[ASN][1000 genomes]
rs1520866	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1595749	0.87[ASN][1000 genomes]
rs16831454	0.93[ASN][1000 genomes]
rs1851104	0.98[ASN][1000 genomes]
rs1866605	0.87[ASN][1000 genomes]
rs1898971	0.87[ASN][1000 genomes]
rs1992295	0.96[ASN][1000 genomes]
rs2304702	0.94[ASN][1000 genomes]
rs2351932	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2351934	0.87[ASN][1000 genomes]
rs2683012	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2882805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4309611	0.86[ASN][1000 genomes]
rs4580411	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4666775	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667280	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4667284	0.86[ASN][1000 genomes]
rs6434340	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6434343	0.91[ASN][1000 genomes]
rs6738193	0.96[ASN][1000 genomes]
rs6747222	0.91[ASN][1000 genomes]
rs6752545	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs734859	0.91[ASN][1000 genomes]
rs7420765	0.82[ASN][1000 genomes]
rs7422875	0.84[ASN][1000 genomes]
rs7425383	0.84[ASN][1000 genomes]
rs744556	0.84[ASN][1000 genomes]
rs745742	0.87[ASN][1000 genomes]
rs7556928	0.91[ASN][1000 genomes]
rs7566093	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7574403	0.96[ASN][1000 genomes]
rs8179541	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8179732	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs893407	0.87[ASN][1000 genomes]
rs893408	0.84[ASN][1000 genomes]
rs9677436	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv584062	chr2:190272195-190376493	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190294000-190305400	Weak transcription	Ovary	ovary

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