Variant report

Variant	rs6434340
Chromosome Location	chr2:190220343-190220344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190210465..190212459-chr2:190217918..190220688,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10166385	0.82[EUR][1000 genomes]
rs10166420	0.83[ASN][1000 genomes]
rs10167242	0.87[EUR][1000 genomes]
rs10172607	0.82[EUR][1000 genomes]
rs10173224	0.82[EUR][1000 genomes]
rs10184895	0.83[EUR][1000 genomes]
rs10188246	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10210634	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10804029	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931403	0.82[EUR][1000 genomes]
rs10931405	0.87[EUR][1000 genomes]
rs10931417	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11676905	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11677167	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11678414	0.80[ASN][1000 genomes]
rs12474942	0.82[EUR][1000 genomes]
rs12621657	0.92[EUR][1000 genomes]
rs12693539	0.88[ASN][1000 genomes]
rs12994482	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13009912	0.83[ASN][1000 genomes]
rs13015207	0.88[ASN][1000 genomes]
rs13018252	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13035381	0.97[ASN][1000 genomes]
rs13408928	0.82[EUR][1000 genomes]
rs13411992	0.82[EUR][1000 genomes]
rs13413518	0.82[EUR][1000 genomes]
rs1356976	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1474000	0.92[EUR][1000 genomes]
rs1520854	0.88[ASN][1000 genomes]
rs1520856	0.95[ASN][1000 genomes]
rs1520866	0.81[ASN][1000 genomes]
rs16831454	0.85[ASN][1000 genomes]
rs1851104	0.90[ASN][1000 genomes]
rs1992295	0.88[ASN][1000 genomes]
rs2304702	0.86[ASN][1000 genomes]
rs2351632	0.82[EUR][1000 genomes]
rs2351635	0.92[EUR][1000 genomes]
rs2351932	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2683012	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2882805	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4580411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666775	0.85[ASN][1000 genomes]
rs4667270	0.82[EUR][1000 genomes]
rs4667280	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6434334	0.87[EUR][1000 genomes]
rs6434337	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6434342	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6434343	0.83[ASN][1000 genomes]
rs6704568	0.92[EUR][1000 genomes]
rs6738193	0.88[ASN][1000 genomes]
rs6747222	0.83[ASN][1000 genomes]
rs6752545	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6761868	0.92[EUR][1000 genomes]
rs734859	0.83[ASN][1000 genomes]
rs7420765	0.84[ASN][1000 genomes]
rs7422875	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7425383	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7556928	0.97[ASN][1000 genomes]
rs7566093	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7574281	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7574403	0.88[ASN][1000 genomes]
rs7603704	0.82[EUR][1000 genomes]
rs8179541	0.83[ASN][1000 genomes]
rs8179732	0.83[ASN][1000 genomes]
rs939158	0.92[EUR][1000 genomes]
rs9677436	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv875615	chr2:190215527-190444392	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190215800-190228400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:190216400-190225400	Weak transcription	Muscle Satellite Cultured Cells	--

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