Variant report

Variant	rs939158
Chromosome Location	chr2:190151217-190151218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190008421..190011287-chr2:190151088..190152689,2	MCF-7	breast:
2	chr2:190007040..190008928-chr2:190150245..190153733,35	MCF-7	breast:
3	chr2:190086588..190088332-chr2:190150217..190152218,2	MCF-7	breast:
4	chr2:190029422..190031666-chr2:190149954..190151681,2	MCF-7	breast:
5	chr2:190088767..190093088-chr2:190148429..190152827,7	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10165257	0.84[ASN][1000 genomes]
rs10166385	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10167242	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10172607	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10173224	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10184895	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10188246	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10207812	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10210634	0.81[EUR][1000 genomes]
rs10755002	0.84[ASN][1000 genomes]
rs10804029	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10931401	1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.86[ASN][1000 genomes]
rs10931403	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10931405	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10931411	0.97[ASN][1000 genomes]
rs11676905	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11678414	1.00[JPT][hapmap]
rs11901914	0.86[ASN][1000 genomes]
rs12474942	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12621657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12994482	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12999125	0.86[ASN][1000 genomes]
rs13006065	0.87[ASN][1000 genomes]
rs13015183	0.83[ASN][1000 genomes]
rs13018252	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13028226	0.84[ASN][1000 genomes]
rs13408928	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13411992	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13413518	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1356161	0.87[ASN][1000 genomes]
rs1356166	0.85[ASN][1000 genomes]
rs1464135	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1474000	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1515866	0.84[ASN][1000 genomes]
rs1520854	1.00[JPT][hapmap]
rs1520858	1.00[JPT][hapmap]
rs1533618	0.90[ASN][1000 genomes]
rs1546617	0.85[ASN][1000 genomes]
rs1851104	1.00[JPT][hapmap]
rs1913892	0.87[ASN][1000 genomes]
rs1983318	0.85[ASN][1000 genomes]
rs1992295	1.00[JPT][hapmap]
rs2351631	0.84[ASN][1000 genomes]
rs2351632	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2351633	0.85[ASN][1000 genomes]
rs2351635	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351932	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2683012	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4580411	0.92[EUR][1000 genomes]
rs4667268	0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs4667270	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4667271	0.90[ASN][1000 genomes]
rs4667275	1.00[ASN][1000 genomes]
rs4667280	0.92[EUR][1000 genomes]
rs6434334	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6434337	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6434340	0.92[EUR][1000 genomes]
rs6434343	1.00[JPT][hapmap]
rs6704568	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6728877	0.84[ASN][1000 genomes]
rs6732534	0.86[ASN][1000 genomes]
rs6747222	1.00[JPT][hapmap]
rs6752545	0.81[EUR][1000 genomes]
rs6761868	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7422875	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7425383	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7566093	0.81[EUR][1000 genomes]
rs7574281	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7599222	0.87[ASN][1000 genomes]
rs7603704	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8179541	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs8179732	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs939160	0.84[ASN][1000 genomes]
rs9677436	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190149200-190153800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:190149400-190152400	Enhancers	Hela-S3	cervix
3	chr2:190149400-190153400	Enhancers	NHDF-Ad	bronchial
4	chr2:190149400-190153600	Enhancers	NH-A	brain
5	chr2:190149400-190153600	Enhancers	NHLF	lung
6	chr2:190149600-190151400	Flanking Active TSS	A549	lung
7	chr2:190149600-190153200	Enhancers	HSMM	muscle
8	chr2:190149600-190153400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:190149800-190153200	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:190150000-190152400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:190150000-190153000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:190150200-190151400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:190150200-190153400	Enhancers	HSMMtube	muscle
14	chr2:190150400-190152400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:190150600-190152400	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:190150600-190152400	Enhancers	HMEC	breast
17	chr2:190150800-190151400	Enhancers	NHEK	skin
18	chr2:190150800-190151600	Enhancers	HUVEC	blood vessel
19	chr2:190150800-190158200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr2:190151000-190152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:190151000-190152400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr2:190151000-190153200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr2:190151000-190153600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr2:190151200-190151400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr2:190151200-190151400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:190151200-190151400	Flanking Active TSS	Osteobl	bone
27	chr2:190151200-190151600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:190151200-190152200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr2:190151200-190152200	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr2:190151200-190152400	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr2:190151200-190153400	Enhancers	HUES64 Cell Line	embryonic stem cell

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