Variant report

Variant	rs1356166
Chromosome Location	chr2:190053011-190053012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10165257	0.91[ASN][1000 genomes]
rs1016622	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs10166385	0.92[ASN][1000 genomes]
rs10167242	0.84[ASN][1000 genomes]
rs10172607	0.95[ASN][1000 genomes]
rs10173224	0.93[ASN][1000 genomes]
rs10184895	0.95[ASN][1000 genomes]
rs10755002	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10931401	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10931403	0.91[ASN][1000 genomes]
rs10931405	0.89[ASN][1000 genomes]
rs10931411	0.83[ASN][1000 genomes]
rs11901914	0.93[ASN][1000 genomes]
rs12105389	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs12474942	0.97[ASN][1000 genomes]
rs12621657	0.84[ASN][1000 genomes]
rs12999125	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13005834	0.82[AFR][1000 genomes]
rs13006065	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13015183	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13028226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13031211	0.80[JPT][hapmap];0.96[YRI][hapmap]
rs13031609	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13408928	0.93[ASN][1000 genomes]
rs13411992	0.92[ASN][1000 genomes]
rs13413518	0.93[ASN][1000 genomes]
rs1356161	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356165	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs1356167	0.90[YRI][hapmap]
rs1356168	0.89[YRI][hapmap]
rs1399991	0.93[YRI][hapmap];0.80[AFR][1000 genomes]
rs1464135	1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1474000	0.86[ASN][1000 genomes]
rs1515866	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1533618	0.95[ASN][1000 genomes]
rs1546617	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1913892	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1973666	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1983318	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351631	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2351632	0.94[ASN][1000 genomes]
rs2351633	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2351635	0.85[ASN][1000 genomes]
rs4667266	0.84[AFR][1000 genomes]
rs4667268	0.93[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4667270	0.93[ASN][1000 genomes]
rs4667271	0.95[ASN][1000 genomes]
rs4667275	0.85[ASN][1000 genomes]
rs6434334	0.88[ASN][1000 genomes]
rs6434337	0.84[ASN][1000 genomes]
rs6704568	0.87[ASN][1000 genomes]
rs6728877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6732534	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6752781	0.81[AFR][1000 genomes]
rs6761868	0.87[ASN][1000 genomes]
rs7419888	0.97[YRI][hapmap]
rs7574281	0.83[ASN][1000 genomes]
rs7599222	0.92[ASN][1000 genomes]
rs7603704	0.88[ASN][1000 genomes]
rs939158	0.85[ASN][1000 genomes]
rs939160	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190045800-190056600	Weak transcription	HSMM	muscle
2	chr2:190046600-190057600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:190052800-190053600	Enhancers	NHDF-Ad	bronchial
4	chr2:190052800-190053800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:190053000-190053200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:190053000-190053400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:190053000-190053400	Enhancers	Osteobl	bone
8	chr2:190053000-190053600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr2:190053000-190053600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:190053000-190053800	Flanking Active TSS	A549	lung

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