Variant report

Variant	rs7603704
Chromosome Location	chr2:190090355-190090356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:190089745..190091907-chr2:190140571..190142995,2	MCF-7	breast:
2	chr2:190090132..190092755-chr2:190097807..190099636,2	MCF-7	breast:
3	chr2:190081415..190084414-chr2:190089702..190092239,3	MCF-7	breast:
4	chr2:190088767..190093088-chr2:190148429..190152827,7	MCF-7	breast:
5	chr2:190033187..190035934-chr2:190088474..190090590,2	MCF-7	breast:
6	chr2:190007864..190009528-chr2:190088531..190091177,2	MCF-7	breast:
7	chr2:190069982..190071927-chr2:190089860..190092492,2	MCF-7	breast:
8	chr2:190069482..190073456-chr2:190088390..190091249,3	MCF-7	breast:

No data

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10165257	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10166385	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10167242	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10172607	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10173224	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10184895	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10188246	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10755002	0.90[ASN][1000 genomes]
rs10804029	0.87[EUR][1000 genomes]
rs10931401	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs10931403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10931405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10931411	0.89[ASN][1000 genomes]
rs11676905	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11901914	0.91[ASN][1000 genomes]
rs12474942	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12621657	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12994482	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12999125	0.89[ASN][1000 genomes]
rs13006065	0.92[ASN][1000 genomes]
rs13015183	0.89[ASN][1000 genomes]
rs13018252	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13028226	0.89[ASN][1000 genomes]
rs13031609	0.82[ASN][1000 genomes]
rs13408928	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13411992	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13413518	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1356161	0.90[ASN][1000 genomes]
rs1356166	0.88[ASN][1000 genomes]
rs1464135	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1474000	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1515866	0.90[ASN][1000 genomes]
rs1520858	1.00[JPT][hapmap]
rs1533618	0.93[ASN][1000 genomes]
rs1546617	0.90[ASN][1000 genomes]
rs1913892	0.90[ASN][1000 genomes]
rs1973666	0.83[ASN][1000 genomes]
rs1983318	0.88[ASN][1000 genomes]
rs2351631	0.90[ASN][1000 genomes]
rs2351632	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2351633	0.93[ASN][1000 genomes]
rs2351635	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2351932	0.85[EUR][1000 genomes]
rs2683012	0.87[EUR][1000 genomes]
rs4580411	0.82[EUR][1000 genomes]
rs4667268	0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs4667270	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4667271	0.93[ASN][1000 genomes]
rs4667275	0.88[ASN][1000 genomes]
rs4667280	0.82[EUR][1000 genomes]
rs6434334	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6434337	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6434340	0.82[EUR][1000 genomes]
rs6704568	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6728877	0.87[ASN][1000 genomes]
rs6732534	0.89[ASN][1000 genomes]
rs6761868	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7422875	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7425383	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7574281	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7599222	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9288163	0.89[YRI][hapmap]
rs939158	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs939160	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190076000-190096800	Weak transcription	Aorta	Aorta
2	chr2:190087400-190090800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:190087600-190099800	Weak transcription	HSMM	muscle
4	chr2:190088400-190097800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:190088600-190095800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:190089600-190091600	Flanking Active TSS	A549	lung

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