Variant report

Variant	rs6435527
Chromosome Location	chr2:210291373-210291374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210291185..210292983-chr2:210295300..210297710,2	MCF-7	breast:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10167443	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170822	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173056	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10194421	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10207360	0.81[CEU][hapmap]
rs1080277	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1080278	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676603	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11676811	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11677905	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680789	0.81[CEU][hapmap]
rs11683031	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11683663	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11684350	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12105310	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12465033	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12467717	0.82[CEU][hapmap]
rs12468058	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470983	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12471015	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13387962	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13388154	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392068	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392136	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392351	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393108	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393164	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395372	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398692	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399548	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13400656	0.86[EUR][1000 genomes]
rs13412990	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413725	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417305	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13425141	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13425647	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446587	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446588	0.87[EUR][1000 genomes]
rs1446597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446598	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236857	0.85[CEU][hapmap]
rs17307079	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17307692	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17725823	1.00[ASN][1000 genomes]
rs17726677	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17726713	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900307	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900308	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993233	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993234	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993236	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2197591	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365653	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365654	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365655	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886432	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2886434	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584962	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55883327	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213369	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213370	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213399	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213400	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213401	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213402	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213404	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213405	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213406	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213407	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213409	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213411	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215409	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62215411	0.82[EUR][1000 genomes]
rs62215412	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718647	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733681	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355281	0.87[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7355625	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288405	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288406	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9288408	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000214	chr2:209987607-210308626	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv536133	chr2:209987607-210308626	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1003864	chr2:210063871-210308626	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1005298	chr2:210277791-210318067	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210288000-210292000	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr2:210288200-210291400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:210288200-210291400	Active TSS	Breast Myoepithelial Primary Cells	Breast
4	chr2:210288200-210291600	Active TSS	Aorta	Aorta
5	chr2:210288200-210291600	Active TSS	Brain Angular Gyrus	brain
6	chr2:210288200-210291600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:210288200-210292400	Active TSS	Cortex derived primary cultured neurospheres	brain
8	chr2:210288200-210294400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210288600-210291600	Active TSS	Fetal Brain Male	brain
10	chr2:210289400-210291400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr2:210289600-210291800	Active TSS	Fetal Brain Female	brain
12	chr2:210289800-210293000	Active TSS	Brain Germinal Matrix	brain
13	chr2:210290000-210291400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:210290000-210292800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr2:210290000-210300200	Weak transcription	Pancreas	Pancrea
16	chr2:210290200-210291400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr2:210290200-210291600	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr2:210290200-210291600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:210290200-210296400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:210290200-210296400	Weak transcription	Osteobl	bone
21	chr2:210290200-210300200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:210290400-210291600	Weak transcription	A549	lung
23	chr2:210290600-210291600	Enhancers	HMEC	breast
24	chr2:210290600-210291800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:210290600-210291800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr2:210290600-210292200	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr2:210290600-210296200	Weak transcription	NH-A	brain
28	chr2:210290800-210291400	Enhancers	NHLF	lung
29	chr2:210290800-210291800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr2:210290800-210291800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:210290800-210291800	Enhancers	HUVEC	blood vessel
32	chr2:210290800-210291800	Enhancers	NHEK	skin
33	chr2:210290800-210292800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:210290800-210293200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr2:210290800-210295800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:210290800-210296200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:210291000-210291400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr2:210291000-210291400	Enhancers	Brain Substantia Nigra	brain
39	chr2:210291000-210291600	Enhancers	Brain Hippocampus Middle	brain
40	chr2:210291200-210291400	Enhancers	H9 Cell Line	embryonic stem cell
41	chr2:210291200-210291400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:210291200-210291400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr2:210291200-210291400	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr2:210291200-210291400	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr2:210291200-210291400	Enhancers	Fetal Muscle Leg	muscle
46	chr2:210291200-210291400	Enhancers	Ovary	ovary
47	chr2:210291200-210291600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr2:210291200-210291600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:210291200-210291800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:210291200-210291800	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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