Variant report

Variant	rs643744
Chromosome Location	chr11:121000212-121000213
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs479299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs504148	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519116	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577733	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584329	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586473	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs597345	0.87[ASW][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs616120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619115	0.97[ASN][1000 genomes]
rs626517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646371	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs657405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659434	0.93[ASN][1000 genomes]
rs659956	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs661189	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670973	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs680511	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120993200-121008000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:120993800-121000600	Weak transcription	Fetal Stomach	stomach
4	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
5	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:120994600-121000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:120996400-121005200	Weak transcription	HSMMtube	muscle
8	chr11:120996800-121005400	Weak transcription	Left Ventricle	heart
9	chr11:120996800-121016400	Weak transcription	Ovary	ovary
10	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:120997200-121005000	Weak transcription	Right Atrium	heart
12	chr11:120998000-121002400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:120998200-121001600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:120998400-121001000	Strong transcription	Fetal Brain Female	brain
15	chr11:120998400-121007800	Weak transcription	Fetal Brain Male	brain
16	chr11:120998800-121007800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:120998800-121009400	Weak transcription	Spleen	Spleen
18	chr11:120999000-121000600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:120999000-121007800	Weak transcription	Gastric	stomach
20	chr11:120999000-121011200	Weak transcription	Aorta	Aorta
21	chr11:120999200-121016200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:120999400-121001000	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:120999400-121004400	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:120999600-121007800	Weak transcription	Brain Germinal Matrix	brain
25	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
26	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain

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