Variant report

Variant	rs661189
Chromosome Location	chr11:120996969-120996970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120995573..120997510-chr11:121009843..121012653,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109927	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs479299	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs504148	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs519116	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536069	0.94[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551199	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs560919	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs577733	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584329	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs586473	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs597345	0.88[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.97[ASN][1000 genomes]
rs616120	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs619115	0.97[ASN][1000 genomes]
rs626517	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs643744	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs646371	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs657405	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs659434	0.93[ASN][1000 genomes]
rs659956	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670973	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
3	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
4	chr11:120991800-120998600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:120992800-120998600	Weak transcription	Brain Germinal Matrix	brain
6	chr11:120993200-121008000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:120993800-121000600	Weak transcription	Fetal Stomach	stomach
8	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
9	chr11:120994200-120999400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:120994600-121000600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:120995400-120998600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:120995800-120998400	Weak transcription	Aorta	Aorta
14	chr11:120996400-120997000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:120996400-120998400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:120996400-121005200	Weak transcription	HSMMtube	muscle
17	chr11:120996600-120998400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:120996800-121005400	Weak transcription	Left Ventricle	heart
19	chr11:120996800-121016400	Weak transcription	Ovary	ovary
20	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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