Variant report

Variant	rs6438493
Chromosome Location	chr3:118849233-118849234
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11916942	1.00[EUR][1000 genomes]
rs11917054	1.00[EUR][1000 genomes]
rs11919244	1.00[EUR][1000 genomes]
rs11922202	1.00[EUR][1000 genomes]
rs13327592	1.00[EUR][1000 genomes]
rs2099487	1.00[EUR][1000 genomes]
rs4337633	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4444702	0.82[AFR][1000 genomes]
rs4446196	0.82[AFR][1000 genomes]
rs4544604	0.82[AFR][1000 genomes]
rs4687969	0.82[AFR][1000 genomes]
rs4687974	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4687975	0.82[AFR][1000 genomes]
rs57447123	1.00[EUR][1000 genomes]
rs58369563	1.00[EUR][1000 genomes]
rs6438498	0.82[AFR][1000 genomes]
rs9682347	1.00[EUR][1000 genomes]
rs9683131	1.00[EUR][1000 genomes]
rs9810251	1.00[EUR][1000 genomes]
rs9810388	1.00[EUR][1000 genomes]
rs9816004	0.82[AFR][1000 genomes]
rs9823555	0.82[AFR][1000 genomes]
rs9824383	1.00[EUR][1000 genomes]
rs9828041	1.00[EUR][1000 genomes]
rs9830074	1.00[EUR][1000 genomes]
rs9841997	1.00[EUR][1000 genomes]
rs9846150	1.00[EUR][1000 genomes]
rs9847851	1.00[EUR][1000 genomes]
rs9853937	1.00[EUR][1000 genomes]
rs9860820	1.00[EUR][1000 genomes]
rs9864127	0.82[AFR][1000 genomes]
rs9864893	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv2756586	chr3:118688611-118863998	Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv829692	chr3:118727772-118901711	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1003880	chr3:118729532-118858123	Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118849000-118849400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr3:118849000-118849400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:118849000-118849400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr3:118849000-118849400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:118849000-118849400	Enhancers	HepG2	liver
6	chr3:118849000-118849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:118849000-118849600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:118849000-118849600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr3:118849000-118849600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:118849000-118849600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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