Variant report

Variant	rs6439630
Chromosome Location	chr3:135902534-135902535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135900499..135903369-chr3:135912979..135914958,2	K562	blood:
2	chr3:135899797..135903153-chr3:135915124..135917007,3	MCF-7	breast:
3	chr3:135901753..135904334-chr3:135966438..135968343,2	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16843739	1.00[GIH][hapmap]
rs1829145	1.00[GIH][hapmap];1.00[LWK][hapmap]
rs2232005	1.00[LWK][hapmap]
rs2655009	1.00[GIH][hapmap];1.00[LWK][hapmap]
rs477142	1.00[LWK][hapmap]
rs9809806	1.00[LWK][hapmap]
rs9826032	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
2	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
3	chr3:135872800-135903600	Weak transcription	Thymus	Thymus
4	chr3:135880000-135906600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:135882800-135905200	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:135889200-135905000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:135889400-135907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr3:135889800-135905000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:135890000-135903800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr3:135890400-135905000	Weak transcription	NHDF-Ad	bronchial
12	chr3:135890400-135909600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:135891000-135905000	Weak transcription	Brain Substantia Nigra	brain
14	chr3:135891400-135904200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:135893600-135904800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:135893600-135905000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:135893600-135910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:135894400-135906800	Weak transcription	Esophagus	oesophagus
19	chr3:135895400-135907000	Weak transcription	Fetal Brain Male	brain
20	chr3:135896400-135905200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:135897000-135904800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:135897400-135907600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr3:135897400-135909800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr3:135897600-135909000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:135897600-135911000	Enhancers	Primary B cells from peripheral blood	blood
26	chr3:135898000-135910200	Weak transcription	HSMM	muscle
27	chr3:135898400-135909200	Weak transcription	Aorta	Aorta
28	chr3:135898600-135904800	Weak transcription	Stomach Mucosa	stomach
29	chr3:135898800-135904400	Weak transcription	Lung	lung
30	chr3:135898800-135905000	Weak transcription	Gastric	stomach
31	chr3:135898800-135905200	Weak transcription	Fetal Thymus	thymus
32	chr3:135898800-135905200	Weak transcription	Pancreas	Pancrea
33	chr3:135898800-135907000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:135899000-135905200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr3:135900000-135902800	Enhancers	A549	lung
36	chr3:135900000-135904600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr3:135900000-135905200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr3:135900400-135905000	Weak transcription	HMEC	breast
39	chr3:135900600-135905000	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:135900800-135910400	Enhancers	Liver	Liver
41	chr3:135901000-135902600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:135901000-135910400	Enhancers	HepG2	liver
43	chr3:135901200-135903000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr3:135901200-135906600	Enhancers	Dnd41	blood
45	chr3:135901400-135903200	Enhancers	Left Ventricle	heart
46	chr3:135901400-135903400	Enhancers	GM12878-XiMat	blood
47	chr3:135901600-135904400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:135901600-135904800	Weak transcription	NHEK	skin
49	chr3:135901600-135905000	Weak transcription	Colonic Mucosa	Colon
50	chr3:135901600-135905000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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