Variant report

Variant	rs16843739
Chromosome Location	chr3:135906650-135906651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135898599..135901770-chr3:135904262..135906651,3	K562	blood:
2	chr3:135898194..135901174-chr3:135905151..135906839,2	K562	blood:
3	chr3:135905762..135909459-chr3:135968082..135970709,4	MCF-7	breast:
4	chr3:135897191..135900047-chr3:135906521..135908665,2	MCF-7	breast:
5	chr3:135903155..135906744-chr3:135912511..135916464,6	MCF-7	breast:
6	chr3:135807631..135809142-chr3:135904444..135906997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction
ENSG00000114054	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16843601	1.00[ASW][hapmap]
rs16843602	1.00[ASW][hapmap]
rs16843806	0.89[AFR][1000 genomes]
rs1829145	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs2655009	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs4317048	1.00[CEU][hapmap]
rs56837163	0.82[AFR][1000 genomes]
rs58836413	0.82[AFR][1000 genomes]
rs61299058	0.82[AFR][1000 genomes]
rs6439630	1.00[GIH][hapmap]
rs72985471	0.94[AFR][1000 genomes]
rs7613398	1.00[CHD][hapmap]
rs7623218	0.90[LWK][hapmap];1.00[MKK][hapmap]
rs9833010	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135889400-135907000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:135889400-135910400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:135890400-135909600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:135893600-135910400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:135894400-135906800	Weak transcription	Esophagus	oesophagus
6	chr3:135895400-135907000	Weak transcription	Fetal Brain Male	brain
7	chr3:135897400-135907600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:135897400-135909800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr3:135897600-135909000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:135897600-135911000	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:135898000-135910200	Weak transcription	HSMM	muscle
12	chr3:135898400-135909200	Weak transcription	Aorta	Aorta
13	chr3:135898800-135907000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:135900800-135910400	Enhancers	Liver	Liver
15	chr3:135901000-135910400	Enhancers	HepG2	liver
16	chr3:135901600-135908600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr3:135901800-135906800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:135901800-135906800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:135901800-135906800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:135901800-135907200	Weak transcription	Fetal Brain Female	brain
21	chr3:135902000-135906800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:135902800-135907000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:135903000-135906800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:135903400-135911200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr3:135904200-135907800	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr3:135904400-135907800	Enhancers	Left Ventricle	heart
27	chr3:135904400-135909800	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr3:135904400-135910400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:135904600-135907800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:135904800-135907600	Enhancers	A549	lung
31	chr3:135904800-135907800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr3:135904800-135907800	Enhancers	Colon Smooth Muscle	Colon
33	chr3:135904800-135907800	Enhancers	Fetal Heart	heart
34	chr3:135904800-135907800	Enhancers	Stomach Mucosa	stomach
35	chr3:135904800-135908200	Enhancers	Primary B cells from cord blood	blood
36	chr3:135904800-135908200	Enhancers	NHEK	skin
37	chr3:135905000-135906800	Enhancers	K562	blood
38	chr3:135905000-135907000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr3:135905000-135907200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr3:135905000-135907400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr3:135905000-135907600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr3:135905000-135907800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:135905000-135907800	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:135905000-135907800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr3:135905000-135907800	Enhancers	Brain Substantia Nigra	brain
46	chr3:135905000-135907800	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr3:135905000-135908000	Enhancers	Brain Hippocampus Middle	brain
48	chr3:135905000-135908200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr3:135905000-135908400	Enhancers	Small Intestine	intestine
50	chr3:135905000-135909000	Enhancers	Brain Inferior Temporal Lobe	brain

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