Variant report

Variant	rs72985471
Chromosome Location	chr3:135956526-135956527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16843739	0.94[AFR][1000 genomes]
rs16843806	0.95[AFR][1000 genomes]
rs6807002	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv508246	chr3:135922023-136038622	Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2760738	chr3:135943988-135957333	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135954600-135958400	Enhancers	HepG2	liver
2	chr3:135955000-135956600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:135955000-135956600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:135955800-135956600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:135955800-135957000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:135955800-135958000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:135956000-135956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:135956000-135957800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:135956000-135958200	Enhancers	Liver	Liver
10	chr3:135956400-135956600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
11	chr3:135956400-135956600	Enhancers	Colon Smooth Muscle	Colon
12	chr3:135956400-135957200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:135956400-135957400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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