Variant report

Variant	rs6439978
Chromosome Location	chr3:140798295-140798296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140791406..140795924-chr3:140797541..140801626,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175093	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11713925	1.00[CHB][hapmap]
rs1426965	0.86[YRI][hapmap];1.00[EUR][1000 genomes]
rs1426966	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851040	1.00[EUR][1000 genomes]
rs16851042	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs16851043	1.00[EUR][1000 genomes]
rs16851045	1.00[EUR][1000 genomes]
rs16851047	1.00[EUR][1000 genomes]
rs57086788	1.00[EUR][1000 genomes]
rs57164953	1.00[EUR][1000 genomes]
rs60787216	1.00[EUR][1000 genomes]
rs6774862	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6775066	1.00[EUR][1000 genomes]
rs6777560	1.00[EUR][1000 genomes]
rs6798242	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72980158	1.00[EUR][1000 genomes]
rs72980166	1.00[EUR][1000 genomes]
rs72980168	1.00[EUR][1000 genomes]
rs72980172	1.00[EUR][1000 genomes]
rs7623980	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624238	1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624581	1.00[EUR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140790600-140802800	Weak transcription	Dnd41	blood
2	chr3:140792800-140808400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:140793400-140806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140794800-140800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:140796200-140799000	Enhancers	Fetal Muscle Trunk	muscle
7	chr3:140796200-140799200	Enhancers	Fetal Muscle Leg	muscle
8	chr3:140796400-140798400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:140796400-140799200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:140796400-140801400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:140796600-140806600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr3:140796600-140807200	Enhancers	Fetal Heart	heart
13	chr3:140796800-140798400	Enhancers	Brain Germinal Matrix	brain
14	chr3:140797000-140800400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:140797000-140804400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:140797000-140805000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr3:140797200-140800000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:140797200-140802200	Weak transcription	Psoas Muscle	Psoas
19	chr3:140797200-140802200	Weak transcription	HSMM	muscle
20	chr3:140797200-140802400	Weak transcription	Right Ventricle	heart
21	chr3:140797200-140802600	Weak transcription	Fetal Intestine Large	intestine
22	chr3:140797200-140802600	Weak transcription	Fetal Intestine Small	intestine
23	chr3:140797200-140802800	Weak transcription	Fetal Kidney	kidney
24	chr3:140797200-140811200	Weak transcription	Fetal Brain Male	brain
25	chr3:140797400-140798400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:140797400-140798400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr3:140797400-140799600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:140797400-140799800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:140797400-140800800	Weak transcription	Adipose Nuclei	Adipose
30	chr3:140797400-140800800	Weak transcription	HSMMtube	muscle
31	chr3:140797400-140801000	Weak transcription	Lung	lung
32	chr3:140797400-140802000	Weak transcription	Left Ventricle	heart
33	chr3:140797400-140802000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:140797400-140802400	Weak transcription	Right Atrium	heart
35	chr3:140797600-140798600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr3:140797600-140799400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr3:140797600-140800400	Weak transcription	Fetal Lung	lung
38	chr3:140797800-140798600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:140797800-140799200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:140797800-140799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr3:140797800-140799600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr3:140797800-140799800	Weak transcription	Pancreas	Pancrea
43	chr3:140797800-140801000	Weak transcription	Placenta	Placenta
44	chr3:140797800-140801600	Weak transcription	Fetal Stomach	stomach
45	chr3:140797800-140801600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr3:140797800-140804600	Weak transcription	Fetal Brain Female	brain
47	chr3:140798000-140798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr3:140798000-140798400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr3:140798200-140798600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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