Variant report

Variant	rs6775066
Chromosome Location	chr3:140795058-140795059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr3:140794914-140795318	HL-60	blood:	n/a	chr3:140795028-140795041

Variant related genes	Relation type
SPSB4	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1426965	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1426966	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16851040	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851042	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16851043	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851045	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16851047	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57086788	1.00[EUR][1000 genomes]
rs57164953	1.00[EUR][1000 genomes]
rs60787216	1.00[EUR][1000 genomes]
rs6439978	1.00[EUR][1000 genomes]
rs6774862	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6777560	1.00[EUR][1000 genomes]
rs6798242	0.84[AFR][1000 genomes]
rs72980158	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72980166	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72980168	1.00[EUR][1000 genomes]
rs72980172	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7623980	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7624238	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7624581	1.00[EUR][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140788200-140797200	Enhancers	H9 Cell Line	embryonic stem cell
2	chr3:140789000-140797600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:140789400-140795800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:140789600-140798000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:140790200-140795400	Weak transcription	Fetal Intestine Small	intestine
6	chr3:140790600-140795200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:140790600-140802800	Weak transcription	Dnd41	blood
8	chr3:140790800-140795400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:140790800-140795400	Weak transcription	Right Atrium	heart
10	chr3:140791200-140796400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:140791800-140797400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr3:140792000-140797400	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:140792200-140797400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:140792400-140795600	Enhancers	Fetal Muscle Leg	muscle
15	chr3:140792400-140796000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:140792400-140797400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:140792400-140797800	Enhancers	Pancreas	Pancrea
18	chr3:140792600-140797800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:140792800-140808400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:140793400-140806600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:140793800-140797800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr3:140794000-140795200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr3:140794000-140797400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr3:140794000-140797800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr3:140794000-140813000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:140794200-140797800	Enhancers	Placenta	Placenta
27	chr3:140794600-140795200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr3:140794600-140795600	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:140794600-140795800	Enhancers	Fetal Stomach	stomach
30	chr3:140794800-140795800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr3:140794800-140795800	Enhancers	Fetal Kidney	kidney
32	chr3:140794800-140800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:140795000-140795200	Enhancers	Brain Cingulate Gyrus	brain
34	chr3:140795000-140795200	Enhancers	Brain Hippocampus Middle	brain
35	chr3:140795000-140795200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr3:140795000-140795200	Enhancers	Brain Substantia Nigra	brain
37	chr3:140795000-140795200	Flanking Active TSS	Colon Smooth Muscle	Colon
38	chr3:140795000-140795200	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr3:140795000-140795200	Flanking Active TSS	Fetal Heart	heart
40	chr3:140795000-140795400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:140795000-140795400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr3:140795000-140795400	Enhancers	Fetal Brain Female	brain
43	chr3:140795000-140795400	Enhancers	Fetal Lung	lung
44	chr3:140795000-140795400	Enhancers	Rectal Smooth Muscle	rectum
45	chr3:140795000-140795400	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr3:140795000-140795600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr3:140795000-140795600	Enhancers	Adipose Nuclei	Adipose
48	chr3:140795000-140795600	Enhancers	Brain Angular Gyrus	brain
49	chr3:140795000-140795600	Enhancers	Brain Anterior Caudate	brain
50	chr3:140795000-140795800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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