Variant report

Variant	rs6439984
Chromosome Location	chr3:140944418-140944419
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1397798	0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1511370	0.86[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes]
rs1511378	0.82[CEU][hapmap]
rs1511386	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1877219	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2063464	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2169868	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4308250	0.88[JPT][hapmap]
rs4683584	0.82[EUR][1000 genomes]
rs4683588	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs6439985	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6439990	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6439993	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs6798093	0.94[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7629077	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs899349	0.82[EUR][1000 genomes]
rs9289627	0.88[CEU][hapmap]
rs9817668	0.82[EUR][1000 genomes]
rs9990218	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140937600-140946800	Weak transcription	Thymus	Thymus
2	chr3:140940000-140949400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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