Variant report

Variant	rs2063464
Chromosome Location	chr3:140931187-140931188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1511386	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1877219	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2169868	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6439984	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6439985	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6439990	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6776346	1.00[AFR][1000 genomes]
rs6798093	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7629077	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs985627	1.00[AFR][1000 genomes]
rs9990218	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140923200-140931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:140923600-140931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:140927800-140932200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140929000-140931400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:140930400-140931800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:140930800-140932200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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