Variant report

Variant	rs985627
Chromosome Location	chr3:140871358-140871359
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140832996..140835828-chr3:140869146..140871657,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10470445	0.81[ASN][1000 genomes]
rs1115182	0.85[EUR][1000 genomes]
rs1115183	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13068771	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1511381	0.95[ASN][1000 genomes]
rs1511383	0.95[ASN][1000 genomes]
rs1511385	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1533129	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1912730	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949114	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2063464	1.00[AFR][1000 genomes]
rs2127098	0.80[EUR][1000 genomes]
rs2169867	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169868	0.86[JPT][hapmap]
rs2311499	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2871782	0.80[EUR][1000 genomes]
rs4683568	0.95[ASN][1000 genomes]
rs4683571	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4683573	0.84[ASN][1000 genomes]
rs6439984	0.86[JPT][hapmap]
rs6439990	1.00[ASW][hapmap]
rs6776346	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6800524	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6809691	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7613134	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7632734	0.95[ASN][1000 genomes]
rs9289620	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9289622	0.87[ASN][1000 genomes]
rs971084	0.95[ASN][1000 genomes]
rs971085	0.95[ASN][1000 genomes]
rs9859339	0.87[ASN][1000 genomes]
rs9876376	0.84[EUR][1000 genomes]
rs995782	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs995784	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9990218	0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140863800-140872200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:140864600-140873200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140866800-140876600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr3:140867000-140871400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:140867000-140871400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr3:140867200-140872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:140867200-140872000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:140867200-140872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:140867400-140873000	Enhancers	Fetal Heart	heart
11	chr3:140868600-140872200	Enhancers	Fetal Muscle Trunk	muscle
12	chr3:140869000-140871600	Weak transcription	Pancreas	Pancrea
13	chr3:140869000-140872200	Enhancers	Right Ventricle	heart
14	chr3:140869600-140873400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:140870200-140876000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:140870600-140871400	Enhancers	Left Ventricle	heart
17	chr3:140870600-140872200	Enhancers	Right Atrium	heart
18	chr3:140870800-140871800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:140870800-140871800	Weak transcription	HSMMtube	muscle
20	chr3:140870800-140872600	Enhancers	Fetal Muscle Leg	muscle
21	chr3:140870800-140873000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr3:140871000-140873000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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